RetrogeneDB ID:

retro_etel_63

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_1074:90906..91297(-)
Located in intron of:ENSETEG00000008754
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:IAH1
Ensembl ID:ENSETEG00000003899
Aliases:None
Description:isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:27696]


Retrocopy-Parental alignment summary:






>retro_etel_63
GGCTATAATACCAGATGGGCCAAAATCATTCTCCCGAGAATCATTGGGAAGGGTAGTAGTCTGGACCGCCCTGTAGCAGT
TACAGTTTTCTTTGGTGCCAATGACAGTGCTTTAAAAGATGAGAATCCTAAGCAACACATCCGCTGGAGGAGTACCTGGA
CAATTTCAAGAGCATGGTGCAGTACCTGAAGTCTGTGGAAATCCCGGAGAACTGAGTGACCCTCATCACGCCGCCGCCTC
TTTGTGAGACAGCTGGGAAAAGGAGTGCATCCTACAAGGTTGCAAATTAAATCGCCTAAACTTGGTTACGGGTGAATATG
CCAAGGCCCGTTTACAAGTAGCTCAAGCCTGCAGGACTGATGCACTCGACCTGTGGACCCTGATGCAGGAG

ORF - retro_etel_63 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.47 %
Parental protein coverage: 75.29 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalGYNTRWAKIILPRIIGNGSGLDRPVAVTIFFGANDSALKDENPKQHI-PLEEYLDNLKSMVQYLKSVDIP
GYNTRWAKIILPRIIG.GS.LDRPVAVT.FFGANDSALKDENPKQHI.PLEEYLDN.KSMVQYLKSV.IP
RetrocopyGYNTRWAKIILPRIIGKGSSLDRPVAVTVFFGANDSALKDENPKQHI<PLEEYLDNFKSMVQYLKSVEIP
ParentalEKRVILITPPPLCETA-WEKECILQGCKLNRLNLVTGEYAKACLQAARDCGTGVLDLWTLMQD
E..V.LITPPPLCETA.WEKECILQGCKLNRLNLVTGEYAKA.LQ.A..C.T..LDLWTLMQ.
RetrocopyEN*VTLITPPPLCETA<WEKECILQGCKLNRLNLVTGEYAKARLQVAQACRTDALDLWTLMQE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Echinops telfairi was not studied using RNA-Seq expression data.