RetrogeneDB ID: retro_etel_576

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: GeneScaffold_9135:60508..60808(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CRCP
• Ensembl ID: ENSETEG00000006118
• Aliases: None
• Description: CGRP receptor component [Source:HGNC Symbol;Acc:17888]

Sequence

>retro_etel_576
ACATTAAAGTATATATCGAAAACGCCGTGCAGACATCAGAGTCCCGAGATTGTCAGAGAATTTCTCACAGCGATGAAAAG
CCACAACTTGACCAAAGCTGAAAAGCTGAAGCTGTTGAACCACAGGCCTATGACTGCTGTTGAGATTCAGCTGATAGTGG
AGGAGAGCGAGGAGCGGCTCACGGAGGAGCAGATCGAGGCCCTGCTGCACACCGACACCAGCATCCTGCCTGCTGACCCG
GAACCTGAGCCTGAGCCTGAGGGCACTGCTGCCTCGGCCATGGAACAGGAGGGCCCAGCC

Alignment

ORF - retro_etel_576 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79. %
• Parental protein coverage: 67.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TLKYISKTPCRHQSPEIVREFLTAMKSHNLTXXXXXXXXXXXXXXXXXXXXIVEESEERLTEEQIEALLH
          TLKYISKTPCRHQSPEIVREFLTAMKSHNLT....................IVEESEERLTEEQIEALLH
Retrocopy TLKYISKTPCRHQSPEIVREFLTAMKSHNLTKAEKLKLLNHRPMTAVEIQLIVEESEERLTEEQIEALLH

Parental  TVTSILPADPEPEPEPEGTAASAMEQEGPA
          T.TSILPADPEPEPEPEGTAASAMEQEGPA
Retrocopy TDTSILPADPEPEPEPEGTAASAMEQEGPA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_576 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000006118	1 retrocopy	retro_etel_576 ,
Myotis lucifugus	ENSMLUG00000012217	1 retrocopy	retro_mluc_1539,