RetrogeneDB ID: retro_etel_569

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: GeneScaffold_9101:119423..119814(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000003231
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: POP5
• Ensembl ID: ENSETEG00000009283
• Aliases: None
• Description: processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) [Source:HGNC Symbol;Acc:17689]

Sequence

>retro_etel_569
ATGGTGCGATTCAAGCACAGGTACTTGCTATGCGAACTGGTGTCCGACGACCCCTGTTGCCGCGTGAGCCTGGAGGACCG
AGTGCTAGACGGCCTCGTATGGGACACCATCACCCGGGGGCTCGGGACGTTCAGCGCAGCCGCCTGCTCCATCGGCTTTG
CGGTGAGATACCTCAACGCCTACACTGGAGTGGTGCTGCTCCGGTGCCCGGCAAGACTTCTACCAGCTGGTCTGGTCGGC
TCTTCCCTTCATCACCTACTTGGAGAACAAAGGGCACTGTTACCCCTGTTTTTTCAACACTTTGCACGTGGGAGGAACAA
TTAGAACATGTCAGAAGTTCCTGATTCAGTACAACAGGAGACAGCTGCTGGTCTTGCTGCAGAACTGCACG

Alignment

ORF - retro_etel_569 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.55 %
• Parental protein coverage: 76.79 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MVRFKHRYLLCELVSDDPRCRLSLEDRVLDGLVRDTITRVHGTFGAAACSIGFTVRYLNAYTGVVLLRC-
          MVRFKHRYLLCELVSDDP.CR.SLEDRVLDGLV.DTITR..GTF.AAACSIGF.VRYLNAYTGVVLLRC.
Retrocopy MVRFKHRYLLCELVSDDPCCRVSLEDRVLDGLVWDTITRGLGTFSAAACSIGFAVRYLNAYTGVVLLRC>

Parental  RKDFYQLVWSALPFIT-MENKGHRYPCFFNTLXXXGTIRTCQKFLIQYNRRQLLVLLQNCT
          R.DFYQLVWSALPFIT..ENKGH.YPCFFNTL...GTIRTCQKFLIQYNRRQLLVLLQNCT
Retrocopy RQDFYQLVWSALPFITYLENKGHCYPCFFNTLHVGGTIRTCQKFLIQYNRRQLLVLLQNCT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_569 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000012668	1 retrocopy	retro_dnov_2643,
Echinops telfairi	ENSETEG00000009283	1 retrocopy	retro_etel_569 ,
Tarsius syrichta	ENSTSYG00000006138	1 retrocopy	retro_tsyr_1763,