RetrogeneDB ID: retro_etel_53

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_221135:6918..8091(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000010063
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000008147
• Aliases: None
• Description: None

Sequence

>retro_etel_53
CCTCTTCCTTTGACCCCAATCCGAGGAGCAGGAGATGGAATGGAAACTGAGGAACCCCCTAAGTCTGTTGAGGTCACCTC
GGGAGCCCAACCCACAAAGCATCACATCCGGCAGAGCCCTCGGAAGAAAACCGTTGCCTCCACGAGCCCAGGAGTTCTTC
AGCTGGGGAAGATTCTTACTGAAAAAGCAGTGGAAGTTGAAGCTGTAAGAATATTTGTCCCCAAAGCGGCTATAACCCAT
GATATCCCTAACAAAAATGCCAAGGTTAAGTCTGGGGGACATCACAAAGGAGACTTCTTCAGTCTGTCAGAGGGAGTCGT
GGAACCTAGGAAAGAGCTGTCTGAAGTAAAGAGTGTTTTGGAAAAGCTCAAGAACTCTGAAAGGAGGTTACTGCAGGACA
AAGAGGGTCTTTCAAACCAGCTCCGAGTTCAGACAGAGGTAAATCGTGAGTTAAAAAAGTTGCTAGCGGCTTCCGTTGGG
AACCATCTTCAGTATCACTTTGAACGTCTAGCTCGTGAAAAAAATCAACTTATCTTAGAAAACGAAGCCCTGTGTCAAAA
CACAGCTCAACTTTCTGAACAGTTAGAACGCATGTCAATACAGTGTGATGTCTGGCGAAGTAAATTCCTCGCAAGCAGGG
TTATGGCAGATGAGCTCACCAACTCCCGAGCAGTGTTGCAGCTACAAAGCCGCGATGCGCAGAGTACGATACAGGATCTC
CTGAGTGAGCGGGAACAGTTTTGCCAGGAAATGTCAGCTACACAGAAATTTTTGGAGGAGCTCTTAGTCTCCTTGCAGTG
GGGAAGGGAGCAAACTTACTACCCTAATGCGCAGCCCCACAGCACAGCAGAACTAGCATTGATCAATCACAAGTTGGCAA
AAGCAGTGAATTCCCATCTACTTGGAAATGTTGGCGCTAACAATCAAAAGAAGATTTCTTCACCTGTTGATTTTTGCAGC
ACCCCAGCTGAAAAAATGGCTGAAACGATTCTGCGCATTTTGGATCCAGTTGCCTGTACAGAGAACTCACCTGATAACCC
ATTTTCGGAGTCTTCACCAGCTTCCTTACTTGCTACAAAGAAAAACATTGGACGTTTTCATCCCTACACTAGATATGAAA
ATATAACTTTCAACTGCTGCAATCATTGTCAGGGAGAACTTACTGCCCTTTAA

Alignment

ORF - retro_etel_53 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.95 %
• Parental protein coverage: 60.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VNRELKKLLVASVGNDLQYHFERLAREKNQLILENEALCQNTAQLSEQLERMSIQCDVWRSKFLASRVMA
          VNRELKKLL.ASVGN.LQYHFERLAREKNQLILENEALCQNTAQLSEQLERMSIQCDVWRSKFLASRVMA
Retrocopy VNRELKKLLAASVGNHLQYHFERLAREKNQLILENEALCQNTAQLSEQLERMSIQCDVWRSKFLASRVMA

Parental  DELTNSRAVLQRQSRDAQSAIQDLLSEREQFRQEMSATQKFLEELLVSLQWGREQTYYPNAQPHSTAELA
          DELTNSRAVLQ.QSRDAQS.IQDLLSEREQF.QEMSATQKFLEELLVSLQWGREQTYYPNAQPHSTAELA
Retrocopy DELTNSRAVLQLQSRDAQSTIQDLLSEREQFCQEMSATQKFLEELLVSLQWGREQTYYPNAQPHSTAELA

Parental  LINHKLAKAVNSHLLGNVGANNQKKISSPVDFCSTPAEKMAETILRILDPVACTENSPDNPFSESSPASL
          LINHKLAKAVNSHLLGNVGANNQKKISSPVDFCSTPAEKMAETILRILDPVACTENSPDNPFSESSPASL
Retrocopy LINHKLAKAVNSHLLGNVGANNQKKISSPVDFCSTPAEKMAETILRILDPVACTENSPDNPFSESSPASL

Parental  LATKKNIGRFHPYTRYENITFNCCNHCQGELTAL
          LATKKNIGRFHPYTRYENITFNCCNHCQGELTAL
Retrocopy LATKKNIGRFHPYTRYENITFNCCNHCQGELTAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_53 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000011473	1 retrocopy	retro_amel_627,
Choloepus hoffmanni	ENSCHOG00000008235	1 retrocopy	retro_chof_1515,
Echinops telfairi	ENSETEG00000008147	1 retrocopy	retro_etel_53 ,
Tupaia belangeri	ENSTBEG00000003379	1 retrocopy	retro_tbel_2191,