RetrogeneDB ID:

retro_etel_514

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_8515:62128..62522(+)
Located in intron of:ENSETEG00000002150
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000011875
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_514
TGTACCATTATCATGCTTGATGTAAGTTCTAGGGTTACTTACAAGAATGTCCCTAACTGGCATAGGGATCTGGTTTGAAT
ATGTGACATGTACCCCTCATGCTGTGTGGCAACAAAGTGGAAGTGAAGGAACAGGAAGGTTAAGGCAAAACCCATGGTCT
TCCACAGAAAGAAGAACCTTCAGTACTGTGACATTTCTGCCAAAAGTAACTACCACTCTGAAAAGCCCTTCCTTTGGCGT
GCTGGAAAACTCACAGGAGACCCTAACTTGCAGTTGGTGGCTATGCCTGCTCTTGCCCCACCGGAGGTTGTAGGGACCCA
GCTGTGGCAGCACAATGTGAGCATGATTCAGAGGTTGTGCAGACCACCGCTCTCCGGATGAGGATGATGACCTG

ORF - retro_etel_514 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.47 %
Parental protein coverage: 99.25 %
Number of stop codons detected: 1
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD-RKVKAKSIVFHRKKNLQYYDISAK
C.IIM.DV.SRVTYKNVPNWHRDLV..C....P..LCGNKV..K..RKVKAK..VFHRKKNLQY.DISAK
RetrocopyCTIIMLDVSSRVTYKNVPNWHRDLV*ICD<HVPLMLCGNKVEVKE>RKVKAKPMVFHRKKNLQYCDISAK
ParentalSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVV-MDPALAAQYEHDLEVAQTTAL-PDEDDDL
SNY..EKPFLW.A.KL.GDPNL..VAMPALAPPEVV..DPA.AAQ.EHD.EV.QTTAL.PDEDDDL
RetrocopySNYHSEKPFLWRAGKLTGDPNLQLVAMPALAPPEVV<RDPAVAAQCEHDSEVVQTTAL<PDEDDDL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Echinops telfairi was not studied using RNA-Seq expression data.