RetrogeneDB ID: retro_etel_34

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: GeneScaffold_8861:31489..32431(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000008045
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000020059
• Aliases: None
• Description: None

Sequence

>retro_etel_34
ATGCCGAAAACCAAGTCGGGCGCGAGCGGCCGGCGCCGCGAGCGGCAGGAACAGCGCCGGGAACTGAAGAGCGCCGGAGG
ACTCATGTTCAACAAGGGGATTGGGCAGCACATTTTGAAAAATCCTCTCATTGTTAACAGCATTATCGACAAGGCTGCCT
TGAGACCGACCGATGTTGTCCTGGAAGTTGGACCTGGAACTGGCAACATGACTGTAAAGTTGCTAGAAAAGGCAAAAAAG
GTAGTTGCCTGTGAACTTGACCCCAGGCTAGTAGCTGAGCTTCACAAAAGAGTGCAGGGCACTCCCATGGCCAGCAAACT
TCAAGTCCTGGTGGGTGATGTGTTGAAAGCAGACTTGCCGTTCTTTGATGCCTGTGTGGCAAATTTGCCTTATCAGATAT
CGTCTCCTTTTGTCTTCAAGCTGTTGCTGCACAGGCCTTTCTTTAGATGTGCGATACTCATGTTTCAAAGGGAATTTGCG
CTCCGGCTGGTTGCAAAACCTGGAGATAAGCTGTACTGCAGACTGTCCATCAATACACAGCTGTTAGCACGGGTAGACCA
TCTAATGAAAGTTGGGAAAAACAACTTCAGACCACCACCCAAGGTAGAATCTAGTGTCGTAAGGATAGAACCTAAGAATC
CGCCACCGCCTATCAATTTTCAGGAATGGGATGGGCTTGTAAGAATCACCTTCGTTAGGAAAAACAAGACCCTGTCTGCT
GCATTTAAGTCAAGTGCTGTACAACAGCTGCTGGAGAAAAACTACAGAATCCACTGTTCGATCCATAACGCTATAATACC
AGAGGATTTCAGCATAGCAGATAAAATACAGCAAGTCCTAACCAACACAGGCTTTAGTGACAAACGGGCCCGTTCCATGG
ACATAGATGACTTCATTAGATTGCTACATGGATTCAATGCCGAAGGCATCCATTTTTCTTAG

Alignment

ORF - retro_etel_34 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100. %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VVACELDPRLVAELHKRVQGTPMASKLQVLVGDVLKADLPFFDACVANLPYQISSPFVFKLLLHRPFFRC
          VVACELDPRLVAELHKRVQGTPMASKLQVLVGDVLKADLPFFDACVANLPYQISSPFVFKLLLHRPFFRC
Retrocopy VVACELDPRLVAELHKRVQGTPMASKLQVLVGDVLKADLPFFDACVANLPYQISSPFVFKLLLHRPFFRC

Parental  AILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINF
          AILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINF
Retrocopy AILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINF

Parental  QEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSIHNAIIPEDFSIADKIQQVLTNTGFSDKRA
          QEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSIHNAIIPEDFSIADKIQQVLTNTGFSDKRA
Retrocopy QEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSIHNAIIPEDFSIADKIQQVLTNTGFSDKRA

Parental  RSMDIDDFIRLLHGFNAEGIHFS
          RSMDIDDFIRLLHGFNAEGIHFS
Retrocopy RSMDIDDFIRLLHGFNAEGIHFS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_34 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000005709	1 retrocopy	retro_etel_734,
Echinops telfairi	ENSETEG00000020059	1 retrocopy	retro_etel_34 ,
Mus musculus	ENSMUSG00000021692	1 retrocopy	retro_mmus_2373,