RetrogeneDB ID:

retro_etel_28

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_318323:3678..4455(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSETEG00000019221
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:SPIN1
Ensembl ID:ENSETEG00000013719
Aliases:None
Description:spindlin 1 [Source:HGNC Symbol;Acc:11243]


Retrocopy-Parental alignment summary:






>retro_etel_28
ATGAAGACCCCCACCGCACAGGAGACTCGGGGACAACAAACCAGAGCAGCTGCAGGACTGGCCGCTGGATCTGCAAACAT
AACGAAAAAAAAAATCTCCCAAAAGAAGCAGAGGGGCAGACCTTCTTCTCAAACCCGCAGGAACATGGTGGGCTGCAGAA
TTTCACATGGATGGAAGGAAGGTGATGAGCCCATCACCCAGTGGAAAGGAACCGTTCTGGATCAGGTGCCTATAAATCCC
TCTCTTTATCTGGTGAAATATGATGGAATTGACTGTGTCTATGGACTGGAACTTCACAGAGATGAAAGAGTTTTGTCTCT
TAAAATTCTTTCTGACAGGGTGGCATCCTCTCAAGTCAGTGATGCAAACCTTGCAAACACCATAATTGGCAAAGCAGTGG
AACATATGTTTGAGGGTGAGCATGGTTCTAAGGATGAATGGAGGGGGATGGTCTTAGCCCAAGCACCTATCATGAGAGCC
TGGTTTTATATTACCTATGAGAAAGATCCTGTCTTGTACATGTACCAGCTTTTAGATGATTATAAAGAAGGTGACCTCCG
TATCATGCCAGAGTCCAATGAATCACTTCCAGCAGAGAGAGAGTCAGGAGGAGTTGTAGATGGCCTGATAGGTAAACATG
TGGAATACACCAAAGAAGATGGCTCCAAACGGATTGGCATGGTCATTCACCAAGTGGAAGCCAAGCCCTCTGTGTATTTC
ATCAAGTTTGATGATGACTTCCATATCTATGTCTATGATTTAGTGAAGAAATCTTAA

ORF - retro_etel_28 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.76 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPI
MKTP....T.GQ..RA....AG..A.........KK.........P.SQ.RRN.VGCRI.HGWKEG..PI
RetrocopyMKTPTAQETRGQQTRAA---AGLAAG--SANITKKKISQKKQRGRPSSQTRRNMVGCRISHGWKEGDEPI
ParentalTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEH
TQWKGTVLDQVP.NPSLYL.KYDG.DCVYGLEL..DERV..L..L.DRVA.S..SDA.LA.T.IGKAVEH
RetrocopyTQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSQVSDANLANTIIGKAVEH
ParentalMFETEDGSKDEWRGMVLARAPIMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEV
MFE.E.GSKDEWRGMVLA.APIM..WFYITYEKDPVLYMYQLLDDYKEGDLRIMP.SN.S.PAERE.G.V
RetrocopyMFEGEHGSKDEWRGMVLAQAPIMRAWFYITYEKDPVLYMYQLLDDYKEGDLRIMPESNESLPAERESGGV
ParentalVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS
VD.L.GK.VEY.KEDGSKR.GMVIHQVEAKPSVYFIKFDDDFHIYVYDLVK.S
RetrocopyVDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKKS