RetrogeneDB ID: retro_etel_2106

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_61812:516..697(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPL33
• Ensembl ID: ENSETEG00000003239
• Aliases: None
• Description: mitochondrial ribosomal protein L33 [Source:HGNC Symbol;Acc:14487]

Sequence

>retro_etel_2106
TTCCTACCTACTATCTCCTCTGCCAAGAGCAACGCAAGCAAGCAGCTTGTTGAAAATAATGAGCCAAGCTGGGACAGGTT
AAACCTTCAACACCAAAAGACAGCAACTATGACAGAAACAGACTCTTTTGCAATACTCCAATGATGAACAAAACATTTTT
CTCTTTTGTGAAACAGGAAAA

Alignment

ORF - retro_etel_2106 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.82 %
• Parental protein coverage: 92.31 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FLTAVSFARSKSKNILV-KMLSQAGTGYTFNTKRSRLREKLTLLRYDPVVQKKVLFVEQKK
          FL...S.A.S.....LV.K..SQAGTG.TFNTKR..L..K.TLL.Y....Q...LF.E..K
Retrocopy FLPTISSAKSNASKQLV>KIMSQAGTG*TFNTKRQQL*QKQTLLQYSNDEQNIFLFCETGK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_2106 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000015881	1 retrocopy	retro_dnov_190,
Echinops telfairi	ENSETEG00000003239	2 retrocopies	retro_etel_2106 , retro_etel_322,
Mus musculus	ENSMUSG00000029142	2 retrocopies	retro_mmus_1869, retro_mmus_1870,