RetrogeneDB ID:

retro_etel_2072

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_47266:1537..1729(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TMEM167A
Ensembl ID:ENSETEG00000016490
Aliases:None
Description:transmembrane protein 167A [Source:HGNC Symbol;Acc:28330]


Retrocopy-Parental alignment summary:






>retro_etel_2072
TCAATTTTCACAGTCTTTTGACTGTAATCTTGTACCTGGGCTTATATTCGTTCCCGGGCTACCAGCATGCTGGAGAGCAA
TAAAGCTAGACTATTGGGTATATTTTGGAAGTATGCCAGAATTGGTGAATGGGCGAGTCCTTCTATTGCAGTGTGTTGTA
TAATGATGGCATTCAGCATCCTGTTCACTAAG

ORF - retro_etel_2072 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.62 %
Parental protein coverage: 90.14 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSLLTVILLLICTCAYIRSLAPSVLDRNKXXLLGIFWKCARIGERKSPYVAACCIVMAFSILFTQ
S..TV..L..CT.AYIRS.A.S.L..NK..LLGIFWK.ARIGE..SP..A.CCI.MAFSILFT.
RetrocopySIFTVF*L*SCTWAYIRSRATSMLESNKARLLGIFWKYARIGEWASPSIAVCCIMMAFSILFTK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Echinops telfairi was not studied using ChIP-Seq data.