RetrogeneDB ID:

retro_etel_2029

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_35853:8638..9043(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DIABLO
Ensembl ID:ENSETEG00000004073
Aliases:None
Description:diablo, IAP-binding mitochondrial protein [Source:HGNC Symbol;Acc:21528]


Retrocopy-Parental alignment summary:






>retro_etel_2029
GCTGTTTATACCTTAATTTCACTGTACCGACAATACACCAATTTACTGGGGAAAATGAACTCACAGGAGGAAGATGAAGT
GTGGCAGGTGATCATAGGAGCCCGGGTTGAGATGACTTCAAAACAACAAGAATACCTTAAGTTGGAAACAACTTGGATGA
CTGCAGTTGGGCTATCAGAGATGGCAGCCGAAGCTGCGTACCAATCTGGAGCAGACCAGGCCTCCATCACAGCCCGGAAC
CACATCCAGCTGGTGAAGTCGCAGGTGCAGGAGGTGCGCCAGCTCTCCCAGAAGGCAGAGACCAAGCTGGCGGAGGCACA
GACCGAGGAGCTGCGGCAGAAAGGCCAGGAGGCAGGGGGTGGTGAGGTGGTGGAGCCGGAGCCTGAGGCCAACCTGCGCG
AGGAC

ORF - retro_etel_2029 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.26 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAVYTLISLYRQYTNLLGKMNSQEEDEVWQVIIGARVEMTSKQQEYLKLETTWMTAVGLSEMAAEAAYQSG
AVYTLISLYRQYTNLLGKMNSQEEDEVWQVIIGARVEMTSKQQEYLKLETTWMTAVGLSEMAAEAAYQSG
RetrocopyAVYTLISLYRQYTNLLGKMNSQEEDEVWQVIIGARVEMTSKQQEYLKLETTWMTAVGLSEMAAEAAYQSG
ParentalADQASITARNHIQLVKSQVQEVRQLSQKAETKLAEAQTEELRQKGQEAGGGEVVEPEPEAYLRED
ADQASITARNHIQLVKSQVQEVRQLSQKAETKLAEAQTEELRQKGQEAGGGEVVEPEPEA.LRED
RetrocopyADQASITARNHIQLVKSQVQEVRQLSQKAETKLAEAQTEELRQKGQEAGGGEVVEPEPEANLRED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Echinops telfairi was not studied using RNA-Seq expression data.