RetrogeneDB ID: retro_etel_1581

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_280274:8037..8354(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DUSP22
• Ensembl ID: ENSETEG00000011289
• Aliases: None
• Description: dual specificity phosphatase 22 [Source:HGNC Symbol;Acc:16077]

Sequence

>retro_etel_1581
GCCAGAGGGGCAGAGCAATTGAGTAAAAATAAGGTGACACATATTCTATCGGTCCATGACAGTGCCAGACCTATGCTGGA
GGCCGTTAAATATTTGTGCATCCCAGCAGCAGATTCACCACCTTAAAACCTGACAAGACAGTCCAAAGAAAGTATTAAGT
TCCTCCATGAGTGCCGGCTGAGAGGGGAGGGCTGTCTGGTGCACTGATTGGCCGGTGTCTCCAGGAGCATGACCTTGGTG
ATGGGCGTACATCATGACCATCACTGACTTTGGCTGGAAGACGCTTGCACACCATGCACGCAGGTCGTTCTTGTGCC

Alignment

ORF - retro_etel_1581 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.4 %
• Parental protein coverage: 64.24 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  ARDAEQLSKNKVTHILSVHDSARPLLEGVKYLCIPAADSPSQNLTRHFKESIKFIHECRLKGEGCLVHCL
          AR.AEQLSKNKVTHILSVHDSARP.LE.VKYLCIPAADSP..NLTR..KESIKF.HECRL.GEGCLVH.L
Retrocopy ARGAEQLSKNKVTHILSVHDSARPMLEAVKYLCIPAADSPP*NLTRQSKESIKFLHECRLRGEGCLVH*L

Parental  AGVSRSVTLVT-AYIMTITDFGW-EDA-LHTVRAGRSCA
          AGVSRS.TLV..AYIMTITDFGW.EDA.LHT..AGRSCA
Retrocopy AGVSRSMTLVM>AYIMTITDFGW<EDA<LHTMHAGRSCA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1581 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000000561	1 retrocopy	retro_etel_1881,
Echinops telfairi	ENSETEG00000011289	1 retrocopy	retro_etel_1581 ,
Rattus norvegicus	ENSRNOG00000018218	2 retrocopies	retro_rnor_858, retro_rnor_887,
Sarcophilus harrisii	ENSSHAG00000015165	2 retrocopies	retro_shar_241, retro_shar_310,
Tursiops truncatus	ENSTTRG00000001848	1 retrocopy	retro_ttru_668,