RetrogeneDB ID: retro_etel_1561

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_278927:6389..6965(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WIBG
• Ensembl ID: ENSETEG00000004461
• Aliases: None
• Description: within bgcn homolog (Drosophila) [Source:HGNC Symbol;Acc:30258]

Sequence

>retro_etel_1561
GGCAAGTACATCGCCTCTACACAGTGACCTGACGGGACCTGGCGGAAACAGCGGAGGGTGAAAGAAGACTACGTGCCACG
AGAGGAGGTCCCAGTGTATGAGAACAAGTATGTGAAGTTTTTTAAGAGTAAGCCAGAACTGCCCCCAGGACTGAGTCCTG
AAGCCACTGCTCCTGCCACCCCCTTTAGGCCTGAAGGTGGTGAACCAGGCCTTTCCAAAACAGCCAAAGGCAACCTGAAG
CGGAAGGAGAAGAGGCGGCAGCAACAAGAGAAGGGGAAAGCAGAGGCCTTGAGCCGGACTCTGGAAAAGATGTCTCTGGG
AGAGACCGCCCCGCTCCCCAGCACTCTGCAAGGCTGCCACGCAGTCCCTGCAGCCACTTCTGACCAGCCTGACTCCGCTG
CCACCACGGAGAAAGCCAAGAAGAAAAAGGATCTGAAGAAGAAGCTACGGCAGGTGGAAGAGCTGCAGCAGCGGATCCAG
GCTGGGGACGTTAGTCAGCCCAGCAAGGAGCAGCTGGAGAAGCTGGCGAGGAGGAGGGCGCTAGAGGAGGAGCTGGGGGA
CCTGGAGTTAGGCCTG

Alignment

ORF - retro_etel_1561 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.19 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GKYFASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKNKPELPPGWSPEATAPAAPFRPEGGEPG
          GKY.ASTQ.PDGTWRKQRRVKE.YVP.EEVPVYENKYVKFFK.KPELPPG.SPEATAPA.PFRPEGGEPG
Retrocopy GKYIASTQ*PDGTWRKQRRVKEDYVPREEVPVYENKYVKFFKSKPELPPGLSPEATAPATPFRPEGGEPG

Parental  LSKTAR-NLKRKEKRRQ--EKGEAEALSRTLEKMSLGETAPLPSTLQGCHAVPAATSDQPDSAATTEKAK
          LSKTA..NLKRKEKRRQ..EKG.AEALSRTLEKMSLGETAPLPSTLQGCHAVPAATSDQPDSAATTEKAK
Retrocopy LSKTAKGNLKRKEKRRQQQEKGKAEALSRTLEKMSLGETAPLPSTLQGCHAVPAATSDQPDSAATTEKAK

Parental  KIKNLKKKLRQVEELQQRIQAGEVSQPSKEQLEKLARRRALEEELGDLELGL
          K.K.LKKKLRQVEELQQRIQAG.VSQPSKEQLEKLARRRALEEELGDLELGL
Retrocopy KKKDLKKKLRQVEELQQRIQAGDVSQPSKEQLEKLARRRALEEELGDLELGL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1561 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000004461	1 retrocopy	retro_etel_1561 ,
Mus musculus	ENSMUSG00000064030	1 retrocopy	retro_mmus_2296,