RetrogeneDB ID: retro_etel_1557

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_278625:82316..83427(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CEP57
• Ensembl ID: ENSETEG00000000996
• Aliases: None
• Description: centrosomal protein 57kDa [Source:HGNC Symbol;Acc:30794]

Sequence

>retro_etel_1557
ATATTTTCTGCTTTGAAGAATCTTCAAGAGAAGATTCGACGTTTAGAACTTGAAAGGATACAGGCAGAAGAAAGTGTGAA
AACCTTGTCTAGAGAAACAAGTGAATACAAGAAGGTGCTGGATGAACAAATACAGGAAAGGGAGAATTCAAAGAATGAGG
AATCAAAGCACAATCAAGAGTTGACATCTCAGTTGGTAGCTGCAGAAAAAAAATGTAATCTTTTAGAAAAGCAATTGGAA
TACATGAGAAATATGATAAAGCATGCAGAAATGGAGAGGACATGTGTCTTAGAGAAACAGGTTTCTTTAGAAAGAGAACG
GCAACATGACCAAAATCATGTTCAGTCCAAACTTGAAAAATTGGATCTTCTTGAACAGGAGTATAACAAACTTACTACGA
TGCAAGCCCTTGCAGAAAAAAAAATGCAAGAGTTAGAAGCCAAACTTCGTGAAGAAGAACAGGAAAGGAAACGTATGCAA
CTTAAGGCAGCCCAGTTGCAAACTGGTCTAGAAACAAATAGAATTATCTTTGAAGAAAAAGCCACTCCATGTGTTGCCAG
TGCAAGAAGAATTAAAAAAAAGAAGTCAAAACCACCGGAAAAGAGAGGTCCTAGAAACGATTTTGCTGCACAGCCACATT
ATAGATTCTGCTTGGGTGATATGCCCTTTGTAGCTGGAAAGTCTACCAGTCCTAGCCATGCGGTGGTAGCCAATGTTCAG
CATGTCTTACATCTCATGAAACAACACAGTAAAGCCTTGTGCAATGATCGAGTAGTGAACAATGTTCCCTTGGCAAAGCA
AGTATCTTCAAGATGTTGTAAAAGTAAGAAGTTGCCTGTAACACCACCCTCCTCTAATACCATTAATGAAGAGTTGACAG
AAGTCTTACAGACGCTGCAGGATGAGTTTGGGCAAATGAGCTTTGATCACCAGCAGCTAGCGAAACTTATCCAGGAGTCA
CCGACTGTTGAATTGAAAGAAGACTTAGAGTGTGAACTGGGAGACATTAGTTGGAAAGATGGAAGCAAAAGCCAATCAAA
TAACTAAAGTTCGAAAATATCAATCTCAGCTGGAGAAACAGAAGATTGAGAAGCAGAGGAAGGAATCAAGA

Alignment

ORF - retro_etel_1557 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.5 %
• Parental protein coverage: 73.56 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  IFSALKNLQEKIRRLELERIQAEESVKTLSRETSEYKKVLDEQIQERENSKNEESKHNQELTSQLVAAEK
          IFSALKNLQEKIRRLELERIQAEESVKTLSRETSEYKKVLDEQIQERENSKNEESKHNQELTSQLVAA..
Retrocopy IFSALKNLQEKIRRLELERIQAEESVKTLSRETSEYKKVLDEQIQERENSKNEESKHNQELTSQLVAAXX

Parental  KCNLLEKQLEYMRNMIKHAEMERTCVLEKQVSLERERQHDQNHVQSKLEKLDLLEQEYNKLTTMQALAEK
          .CNLLEKQLEYMRNMIKHAEMERTCVLEKQVSLERERQHDQNHVQSKLEKLDLLEQEYNKLTTMQALA..
Retrocopy XCNLLEKQLEYMRNMIKHAEMERTCVLEKQVSLERERQHDQNHVQSKLEKLDLLEQEYNKLTTMQALAXX

Parental  KMQELEAKLREEEQERKRMQLKAAQLQTGLETNRIIFEEKATPCVASARRIKKKKSKPPEKRGPRNYFAA
          ..QELEAKLREEEQERKRMQLKAAQLQTGLETNRIIFEEKATPCVASARRI...KSKPPEKRGPRN.FAA
Retrocopy XXQELEAKLREEEQERKRMQLKAAQLQTGLETNRIIFEEKATPCVASARRIXXXKSKPPEKRGPRNDFAA

Parental  QPHYRLCLGDMPFVAGKSTSPSHAVVANVQHVLHLMKQHSKALCNDRVVNNVPLAKQVSSRCCKSKKLPV
          QPHYR.CLGDMPFVAGKSTSPSHAVVANVQHVLHLMKQHSKALCNDRVVNNVPLAKQVSSRCCKSKKLPV
Retrocopy QPHYRFCLGDMPFVAGKSTSPSHAVVANVQHVLHLMKQHSKALCNDRVVNNVPLAKQVSSRCCKSKKLPV

Parental  TPPSSNTINEELTEVLQTLQDEFGQMSFDHQQLAKLIQESPTVELKEDLECEL-ETLVGKMEAKANQITK
          TPPSSNTINEELTEVLQTLQDEFGQMSFDHQQLAKLIQESPTVELKEDLECEL.ETLVGKMEAKANQITK
Retrocopy TPPSSNTINEELTEVLQTLQDEFGQMSFDHQQLAKLIQESPTVELKEDLECEL>ETLVGKMEAKANQITK

Parental  VRKYQSQLEKQKIEKQRKESR
          VRKYQSQLEKQKIEKQRKESR
Retrocopy VRKYQSQLEKQKIEKQRKESR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1557 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000000996	1 retrocopy	retro_etel_1557 ,
Homo sapiens	ENSG00000166037	1 retrocopy	retro_hsap_474,
Macaca mulatta	ENSMMUG00000014796	1 retrocopy	retro_mmul_575,
Nomascus leucogenys	ENSNLEG00000007130	1 retrocopy	retro_nleu_888,
Tupaia belangeri	ENSTBEG00000003141	1 retrocopy	retro_tbel_2135,