RetrogeneDB ID:

retro_etel_1124

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_215346:2369..3095(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSETEG00000017307
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:TOMM40L
Ensembl ID:ENSETEG00000015755
Aliases:None
Description:translocase of outer mitochondrial membrane 40 homolog (yeast)-like [Source:HGNC Symbol;Acc:25756]


Retrocopy-Parental alignment summary:






>retro_etel_1124
GGGCTGTGCCCCACCAGGAGCTCTGCCCAGCCCTGGGATCCTCTTCCTAACTCTGGGAGCTTCAATGCGCTACATGGAAT
ATGCAAAGAGGTATCTCTAGCCCAGACAGAAGGAGTGAAGCTCATTGTCAACAAGATTCTGAGCAGCCATTTCCAAGTGG
TGCACACTGTGAATATGAAGGCCCTGAGCTATCACCTCCACGCCATCCATGCTGGGGACTGTCCGCTTAGCCCCAGTGAG
GTGTTCCCCATTGTGGTCAGGAACATGGACAGCAGTGGCAGCCTCAATGCCCGAGTCCTACTCCTCTTGGCAGAGCGGCT
TCGAGCTAAGGTTGTCTTCCAGATGCATCAGGCCAAGTTCCAGATGTGGCAGTTTGATAGTGAGTATCGGGGAGATGACT
ACACAGCCACTCTGACCCTAGGAGATCCAGACCTGATTGGAGAATTGGTGATCATGGTGGTCACATCCTACAGGTCCTCA
CCTATCGGCTAGGAGTAGGGCAAGAGCTAGTGTACCCCCATTGGCCAAGCAAAAAGGGAGTCATCTTGACACTGGCTCGG
ACGGGCCGGGCTGTACACTGGGAAGCTATATGGACTGTAGTCAGGCAGGAGGGCATGCAGGTTAGTACCACGAGCAAATG
AACAGATTGAGGTTGGAGTGGAATCTGAAGCAAACACAAGGCTACAGGATACAACCTTCTCCTTTGGTTACCACCTCACA
CGGCCC

ORF - retro_etel_1124 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.47 %
Parental protein coverage: 79.55 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalGAVPRRTPRRE-EPLPNPGSFDELHRLCKDVFPAQMEGVKLVVNKVLSSHFQVAHSVHMSALGLPGYHLH
G..P.R.......PLPN.GSF..LH..CK.V..AQ.EGVKL.VNK.LSSHFQV.H.V.M.AL....YHLH
RetrocopyGLCPTRSSAQPWDPLPNSGSFNALHGICKEVSLAQTEGVKLIVNKILSSHFQVVHTVNMKALS---YHLH
ParentalAVYAGDCQLSPSEVFPTVVGDMDSSGSLNAQVLLLLAERLRTKAVFQTQQAKFLTWQFDGEYRGDDYTAT
A..AGDC.LSPSEVFP.VV..MDSSGSLNA.VLLLLAERLR.K.VFQ..QAKF..WQFD.EYRGDDYTAT
RetrocopyAIHAGDCPLSPSEVFPIVVRNMDSSGSLNARVLLLLAERLRAKVVFQMHQAKFQMWQFDSEYRGDDYTAT
ParentalLTLGNPDLIGESVIMV-AHFLQSLTHRLVLGGELVYHRRPGEEGAILTLAGKYSAVHWEAT-LNVGSGGA
LTLG.PDLIGE.VIMV..H.LQ.LT.RL..G.ELVY...P...G.ILTLA....AVHWEA........G.
RetrocopyLTLGDPDLIGELVIMV<GHILQVLTYRLGVGQELVYPHWPSKKGVILTLARTGRAVHWEAI<MDCSQAGG
ParentalHASYYH-KANEQVQVGVEFEANTRLQDTTFSFGYHLTLP
HA..YH..ANEQ..VGVE.EANTRLQDTTFSFGYHLT.P
RetrocopyHAG*YH<RANEQIEVGVESEANTRLQDTTFSFGYHLTRP