RetrogeneDB ID:

retro_etel_1069

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_206493:6163..6957(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSETEG00000005925
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:FH
Ensembl ID:ENSETEG00000018721
Aliases:None
Description:fumarate hydratase [Source:HGNC Symbol;Acc:3700]


Retrocopy-Parental alignment summary:






>retro_etel_1069
GAATTTAGTGGTTGTGTTCAACAAGTAAATTATGCAATGATAAGAATAAAAGCTGCACTGCCAAGAATCTATGAGCTTGC
TGCTGGAGGCACTGTTGTTGGTACTGCTTTAAATACTAGAATTGGCTTTGCGGAAAAGGTTGTTTCAAAGGTGGTGGCTG
CACTTACAGGCTTGCCTTTTGTTACAGCTCCAAATAAATTTGAAGCTCTGGCTGCTCACGATGCCTTGGTTGAACTCAGT
GGAGCCCTGAATACTGCAGCATGTAGTCTGATGAAGATAGCAAATGACATTCGTTTTCTGGGTTCTGGTCCTCGATCAGG
TCTGGGAGAACTGATCTAGCCTGAAAATGAACCGGGAAGCAGTATCATGCCAGGAAAGGCGACCCCTACCCAGTGTGAAG
CTGTGACCATGGTTGCAGCCCAAGTTATGGGAAATCATGTTGCTGTTACTATTGGAGGTAACAATGGACCTTTTGAGTTG
AATGTTTTCAAGCCAATGATGATTAAAAATGTGTTACATTCAGCAAGGCTGCTCGGTGATGCTTCAGTTTCTTTCACAGA
AAACTGTGTGGTAGGAATCCAGGCCAACAGAGAAAGAATCACCAAGCTAATGAATGAGTCTTTAATGTTGGTAACAGCAC
TTAATCCTCATATAGGTTATGACAAGGCTGCAAAGATTGCTAAGACAGCACACAAAAATGGATCAACCTTAAAGGAAACT
GCCATTGAACTTGGCTATCTCACGCAGAGCAGTTTGATGAGTGGGTGACGCCTACAGATATGCTGGGTCCAAAG

ORF - retro_etel_1069 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.35 %
Parental protein coverage: 52.49 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalEFSAYVQQVNYAMVRIKAALPRIYELAAGGTAVGTGLNTRIGFAEKVASKV-AALTALPFVTAPNKFETL
EFS..VQQVNYAM.RIKAALPRIYELAAGGT.VGT.LNTRIGFAEKV.SKV.AALT.LPFVTAPNKFE.L
RetrocopyEFSGCVQQVNYAMIRIKAALPRIYELAAGGTVVGTALNTRIGFAEKVVSKVVAALTGLPFVTAPNKFEAL
ParentalAAHDALVELSGAMNTAACSLMKIANDIRFLSSGPRSSLRELILPENEPGSSIMPGKVNPTQCEALTMVAA
AAHDALVELSGA.NTAACSLMKIANDIRFL.SGPRS.L.ELI.PENEPGSSIMPGK..PTQCEA.TMVAA
RetrocopyAAHDALVELSGALNTAACSLMKIANDIRFLGSGPRSGLGELI*PENEPGSSIMPGKATPTQCEAVTMVAA
ParentalQVMGNHVAVTIGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLML
QVMGNHVAVTIGG.NG.FELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQAN.ERI.KLMNESLML
RetrocopyQVMGNHVAVTIGGNNGPFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANRERITKLMNESLML
ParentalVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLT-AEQFDEWVKPTDMLGPK
VTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLT.AEQFDEWV.PTDMLGPK
RetrocopyVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLT<AEQFDEWVTPTDMLGPK