RetrogeneDB ID: retro_drer_6

Retrocopy location

• Organism: Zebrafish (Danio rerio)
• Coordinates: 1:24590114..24591267(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSDARG00000094763
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: NPY2R (1 of 3)
• Ensembl ID: ENSDARG00000057718
• Aliases: None
• Description: neuropeptide Y receptor Y2 [Source:HGNC Symbol;Acc:7957]

Sequence

>retro_drer_6
ACTGAATACAAAAATGGATGTAAGAACCCAAATAAACACATCTGAAGATGGAACCCTGAGCCAGCTAAATCAGTCCACAA
ACTGTTGTGCACCAGACACTGCTGAAGTTGATGCAGCCTTACTGGATGGTCTGGAAGACAGTACAAAACTGGTGGGTGTT
CAAGTGATCTTGATTTTGGCTTACAGCACCATCATTTTTTTTGGCATGACCGGGAACTCCTTGGTCATATATGTCGTATA
CAAGTTTCGCAATTTACACACGGTGACTAACTATTTCATTGTCAACTTGGCTGTAGCAGACTTGCTGGTAAACACATTGT
GTTTACCTTTTACTTTGATGTACACACTCTATGGAGAGTGGAAATTTGGACAGGTGATGTGTTACCTATTGCCGTACGCA
CAAGGCTTAGCAGTCCACGTTTCAACCATCACACTTAACGTTATAGCACTGGACAGATACCGTAGCATCGTCTACCACAT
GGAAACCAAGATGTCTAAAGACATGTGCGTAGTTGTCATCGCCATCACTTGGGTGGCAAGCGCGATCCTCGCTAGCCCTC
TTGCTATTTTCCGTGAATATGTGACCTTTGACCTTTCACCTGAGCAGACGATTCAAGGTTGCGCAGAAAAGTGGCCTGGA
AGTAGCACAGATGGAACCATCTACAGCATCGCCATGTTTTTTCTACAATATGGCCTGCCGTTGTCCATCATTTCATTTGC
ATACACTCGGATTTGGAACAAGCTAAGAAATCATGTCAGCCCCGGCGGTGGCCGCAGCGACCGCCATCAACGAAGACAGA
AAACAACAAAAATGCTTGTAGCTGTAGTGGTGGTCTTCACCGTTAGCTGGCTGCCATTTCACGCCTTCCAGCTTGCTGTG
GACATCGACAGCAGTGTATTAGAAATAAGAGACTTCAAATTGCTCTATACAGCTTTCCATATTGTTGCCATGTGCTCCAC
TTTTGCAAATCCTATCCTCTATGGTTGGATGAATAGGAACTACAGAGGATCTTTTGTTGCTGTGTTCAAGTGTGGAAGGA
TAAATAATGGAATGAGAAGGGTTAGCAGCAGTGAGGCAGTAAGGGAAAAATGTACACGTAATTTGGAAAACACAATCAGT
ATTGCTCTTACACAAGCAAACACACTTGTGTGA

Alignment

ORF - retro_drer_6 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.39 %
• Parental protein coverage: 87.4 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LGDSTKLLGVQVVLILAYSTIILLGVVGNSLVIYVVYKFKTLRTVTNFFIANLAVADLLVNTLCLPFTLA
          L.DSTKL.GVQV.LILAYSTII..G..GNSLVIYVVYKF..L.TVTN.FI.NLAVADLLVNTLCLPFTL.
Retrocopy LEDSTKLVGVQVILILAYSTIIFFGMTGNSLVIYVVYKFRNLHTVTNYFIVNLAVADLLVNTLCLPFTLM

Parental  YTLLREWKFGQVLCFTLPYAQGLAVHVSTITLNVIALDRHRCIVYHLDTRMSKDTCFLVIAITWVVSAVL
          YTL..EWKFGQV.C..LPYAQGLAVHVSTITLNVIALDR.R.IVYH..T.MSKD.C..VIAITWV.SA.L
Retrocopy YTLYGEWKFGQVMCYLLPYAQGLAVHVSTITLNVIALDRYRSIVYHMETKMSKDMCVVVIAITWVASAIL

Parental  ASPLAIFREYGIVDLSPDNSIEVCGEKWPDSSTDSTLYSISTLLLQYVLPLAIISFAYIRIWSKLRNHVS
          ASPLAIFREY...DLSP...I..C.EKWP.SSTD.T.YSI....LQY.LPL.IISFAY.RIW.KLRNHVS
Retrocopy ASPLAIFREYVTFDLSPEQTIQGCAEKWPGSSTDGTIYSIAMFFLQYGLPLSIISFAYTRIWNKLRNHVS

Parental  P-VGRNDRHHRRRKTTKMLVTMVVVFAVSWLPFHAFQLAIDIDHSVLDMKDFRLLYTVFHIVAMCSTFAN
          P..GR.DRH.RR.KTTKMLV..VVVF.VSWLPFHAFQLA.DID.SVL...DF.LLYT.FHIVAMCSTFAN
Retrocopy PGGGRSDRHQRRQKTTKMLVAVVVVFTVSWLPFHAFQLAVDIDSSVLEIRDFKLLYTAFHIVAMCSTFAN

Parental  PLLYGWMNRNYRSAFVAVFRCKERLDSLHTEGQPAATVRSKPKKALE
          P.LYGWMNRNYR..FVAVF.C..R.............VR.K....LE
Retrocopy PILYGWMNRNYRGSFVAVFKC-GRINNGMRRVSSSEAVREKCTRNLE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Danio rerio was not studied using RNA-Seq expression data.

ChIP-Seq

Danio rerio was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_drer_6 retrocopy.

TSS

Danio rerio was not studied using FANTOM5 data.

Lab

retro_drer_6 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_drer_6 has 0 orthologous retrocopies within teleost group .

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Danio rerio	ENSDARG00000057718	1 retrocopy	retro_drer_6 ,
Oreochromis niloticus	ENSONIG00000014098	1 retrocopy	retro_onil_24,
Xiphophorus maculatus	ENSXMAG00000008242	1 retrocopy	retro_xmac_16,