RetrogeneDB ID: | retro_drer_27 | ||
Retrocopylocation | Organism: | Zebrafish (Danio rerio) | |
| Coordinates: | 20:35585784..35586141(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | si:ch211-178j18.4 | ||
| Ensembl ID: | ENSDARG00000096024 | ||
| Aliases: | None | ||
| Description: | si:ch211-178j18.4 [Source:ZFIN;Acc:ZDB-GENE-110914-148] |
Retrocopy-Parental alignment summary:
>retro_drer_27
ATGGAGGCGGATATGGCTGAGGTCTCCCTTCGCCTCGGCCAGCGGTGCGAGCTGCCTCCCAGGACCCAGACGGATTTTCG
CAGCTTCTGCGTTGCCACTCTAATGTGGCTACACCGTCTGGGTCCTGGAAGCGTCATGGAGCTTAGGGTGCGGGAGTGGC
TGGGCAGGCGGCCAGAGGGAGAGGCTGTAATCCTGACGCTTCACGGGAAAACCGTGAGCCTGAGCCGGAAAGAGAAGGAG
TGGCTGGAATGCTATTACAGGCACATCCGGCCGCTCTGCCTTAGGGCTCGGGCTTCGGGGGCAGAGGAAAAGGGATGCTT
CTTCCTGGGAGCGTCAGGACTCCCCCTCACTAACCCA
ATGGAGGCGGATATGGCTGAGGTCTCCCTTCGCCTCGGCCAGCGGTGCGAGCTGCCTCCCAGGACCCAGACGGATTTTCG
CAGCTTCTGCGTTGCCACTCTAATGTGGCTACACCGTCTGGGTCCTGGAAGCGTCATGGAGCTTAGGGTGCGGGAGTGGC
TGGGCAGGCGGCCAGAGGGAGAGGCTGTAATCCTGACGCTTCACGGGAAAACCGTGAGCCTGAGCCGGAAAGAGAAGGAG
TGGCTGGAATGCTATTACAGGCACATCCGGCCGCTCTGCCTTAGGGCTCGGGCTTCGGGGGCAGAGGAAAAGGGATGCTT
CTTCCTGGGAGCGTCAGGACTCCCCCTCACTAACCCA
ORF - retro_drer_27 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 80.67 % |
| Parental protein coverage: | 60.71 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MEADMAEVARRLSQRCELPPRTQMEFRSFCVATLVWLHRLGPGSVRELKEREWLGRRPEGDAVILTLPSE |
| MEADMAEV..RL.QRCELPPRTQ..FRSFCVATL.WLHRLGPGSV.EL..REWLGRRPEG.AVILTL... | |
| Retrocopy | MEADMAEVSLRLGQRCELPPRTQTDFRSFCVATLMWLHRLGPGSVMELRVREWLGRRPEGEAVILTLHGK |
| Parental | AVSLSRKEKEWLECYFRHVRPLCLKAYAAGTDDKGCFFLGASGLALTNP |
| .VSLSRKEKEWLECY.RH.RPLCL.A.A.G...KGCFFLGASGL.LTNP | |
| Retrocopy | TVSLSRKEKEWLECYYRHIRPLCLRARASGAEEKGCFFLGASGLPLTNP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_drer_27 retrocopy.
Danio rerio was not studied using FANTOM5 data.
retro_drer_27 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_drer_27 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Danio rerio | ENSDARG00000096024 | 3 retrocopies |
retro_drer_27 , retro_drer_29, retro_drer_30,
|