RetrogeneDB ID: retro_drer_2

Retrocopy location

• Organism: Zebrafish (Danio rerio)
• Coordinates: 20:53927362..53933173(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSDARG00000090637
• Aliases: myh6, amhc
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: smyhc1
• Ensembl ID: ENSDARG00000071430
• Aliases: smyhc1, fb18g10, im:6897999, wu:fb18g10
• Description: slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]

Sequence

>retro_drer_2
ATGGGTGATGCTTTAATGGCAGAGTTCGGGAAGGCGGCTCCATTCCTGAGGAAATCTGACAAAGAGCGTCTGGAAGCTCA
AACCAGAGCCTTCGATATCAAAACCGAATGTTTCGTGGTGGATGAAAAGGTGGAGTACGTGAAGGGGCAAATCCAGAATA
AGGATGGAGGGAAGGTGACTGTAAAAACTGAAGATGGAAGAACGGTGACGGTCAAAGATGGAGATGTGCATCCTCAAAAC
CCGCCTAAATTCGATAAAATCGAGGACATGGCGATGCTGACGTTTCTTCATGAACCTGCGGTGCTGTTCAATCTAAAGGA
GAGATACACCGCATGGATGATCTACACCTATTCTGGGCTGTTTTGTGTCACCGTAAACCCTTATAAGTGGTTACCGGTGT
ATGATGCAGATGTAGTCGCTGCTTACCGTGGTAAGAAGAGGACAGAAGCGCCTCCTCACATCTTCTCCATCTCAGATAAT
GCTTATCAATACATGCTGACCGACCGGGAGAATCAGTCTGTGCTCATCACCGGAGAATCCGGCGCTGGGAAGACTGTAAA
CACTAAGAGGGTCATCCAGTATTTTGCTAGCATCGCTGCCGCTGGGGGATCCGCTGGAAAAAAGGACTCGAGCAAGGGAA
CGTTGGAGGATCAGATTATTCAAGCTAACCCTGCGCTGGAGGCTTTCGGCAATGCGAAAACGCTCCGAAACGACAACTCG
TCTCGCTTCGGGAAATTCATCCGCATTCATTTCGGGACGAGCGGAAAACTGTCATCGGCTGATATCGAAACGTACCTGTT
GGAGAAGTCAAGAGTGACCTTCCAGCTGAAGTCTGAGAGAAACTACCATATCTTCTTCCAGATATTATCCAACGAGAAGC
CCGAGCTTCTGGACATGCTATTGATCACCAATAATCCATACGACTACTCGTACATCTCACAAGGAGAAGTGACCGTCTCA
TCTATCAATGATAATGAGGAGCTGATAGCGACCGATAAGGCTTTTGATGTGCTTGGCTTCACGTCTGAGGAGAAGATGGG
AGTCTATAAGCTGACCGGCGCTATCATGCATTACGGAAACATGAAATTCAAGCAGAAGCAGCGCGAGGAGCAGGCCGAGC
CCGACGGCACTGAAGACGCAGATAAAGCAGCTTATCTAATGGGGCTGAACTCTGCCGACCTGCTCAAAGGACTCTGCCAT
CCAAGGGTTAAGGTGGGCAATGAATATGTTACAAAAGGACAAAGTGTGGACCAGGTGTATTACTCAATCGGCGCACTGGC
CAAGTCGGTGTATGAGAAAATGTTCAACTGGATGGTGGTGAGAATTAACCAATCCCTCGACACCAAGCAACATCGACAGT
ATTTCATCGGTGTGCTTGACATCGCTGGCTTTGAAATCTTTGATTTCAACACATTTGAACAACTCTGCATTAATTTCACC
AACGAGAAGCTGCAACAGTTCTTCAATCACCACATGTTTGTTCTGGAGCAGGAGGAATACAAAAAAGAGGGAATTGACTG
GGAGTTCATTGACTTCGGGATGGATCTGCAATCCTGCATTGATCTGATTGAGAAACCCCTAGGGATCATGTCAATTCTGG
AGGAAGAGTGCATGTTTCCAAAGGCCAGCGATCAAACATTTAAAGCAAAGCTTTATGACAACCACCTAGGGAAAACCAAC
ATTTTCCAGAAGCCACGAGCTGTGAAGGGAAAGGCAGAAGCACACTTTGCTTTATCCCACTATGCAGGTACTGTCGACTA
TAATATAGCGGGTTGGCTGGTGAAGAACAAAGACCCGCTGAATGAAACAGTAGTCGGACTTTATCAGAAGTCTTCATTGA
AGCTGTTGAGTCTTTTATTCTCCAGTTATGCAGGATCAGACGGCGGTGAAAAATCAGGTGGGAAAGGGGCCAAGAAAAAG
GGCTCATCTTTTCAGACGGTGTCTGCCCTGCATAGAGAAAACCTTAACAAATTAATGACCAATCTGAAAACCACTCACCC
ACACTTTGTCCGCTGTTTAATTCCAAATGAGAGCAAGATTCCGGGAATCATGGACAACTGTTTGGTCATGCACCAGCTCC
GCTGCAATGGTGTACTAGAGGGAATCAGGATTTGCAGGAAAGGTTTCCCCAACAGGATTCTTTATGGAGATTTCAAACAA
AGATACAGAATCCTGAACGCATCAGCCATCCCAGAAGGACAGTTCATAGAGAACAAGAAGAGTGCAGAGAAGCTGTTGGG
GTCTCTAGATATTGACCACACGCAATACAAATTTGGCCACACAAAGGTCTTTTTTAAAGCAGGTCTACTCGGTACCTTGG
AGGAGATGCGAGATGACCAACTCGCTCGTATCCTCACTGGAATCCAAGCATTCGCTCGTGGACTTCTGATGAGAGTCGAG
TATCAGAAACTGGTGGAGCGTAGAGATGCGCTGATGGTGGTGCAGTGGAACCTGCGCTCCTTCCTCGGTGTGAAAAACTG
GCCGTGGATGAAACTCTTCTTCAAGATAAAACCCTTGCTGAAGAGCGCCGAGTCTGAAAAGGAGATGGCAAACATGAAAG
ATGAATTCAATAAGTTGAAGGAAGCCTTGGAAAAATCTGACGCCAGAAGGAAAGAGTTGGAGGAAAAAATGGTGTCGTTG
CTTCAAGAGAAGAATGATTTGCTCCTTCAGGTGCAATCGGAGCAGGACACGCTAACGGACGCAGAGGAACGATGTGAGCA
GCTCATAAAAAGCAAGATCCAGCTAGAAGCTAAAGTTAAAGAGCTGTCGGAGAGAATTGAGGATGAGGAAGAAATAAATG
CAGATCTCACAGCCAAGAGACGCAAGCTAGAAGACGAATGCTCTGAGCTCAAGAAAGACATCGATGACCTGGAACTGACA
CTGGCTAAGGTAGAAAAGGAAAAGCATGCTACTGAGAACAAAGTGAAGAATATTACCGAAGAAATGGCATCTCTTGATGA
AAATATAATGAAACTCACCAAGGAGAAAAAAGCACTGCAGGAGGCTCACCAGCAGACACTGGATGACCTTCAAAGTGAGG
AGGACAAAGTGAACACACTAACAAAAGCCAAAGTTAAGCTTGAACAACAGGTGGATGATCTTGAGGGCTCGCTGGAGCAG
GAGAAAAAAGTCAGAATGGACTTGGAGCGCAGCAAGAGGAAGCTGGAAGGAGATGTCAAACTGACTCAAGAAAATGTAAT
GGACTTAGAAAACGACAAACAGCAACTGGAGGACAAGCTCAAGAAGAAAGACTTTGAGATCAATCAGCTGAATCAAAGAA
TCGAAGATGAGCAAATGGCTTCGGTGCAGTTGCAGAAGAAATTAAAAGAAAACCAAGCTCGGATTGAAGAACTCGAAGAG
GAGCTGGATGCAGAGCGAGCTGCTCGTGCAAAAGTGGAGAAGCAGCGATCTGACATTTCCAGAGAACTGGAGGACATCAG
CGAGCGCCTGGAGGAGGCAGGGGGAGCCACGTCTGCTCAGGTGGAGCTCAATAAAAAAAGAGATGCAGAGTTTCAGAAGA
TCCGCAGGGATCTTGAGGAATCCACCCTTCAGCATGAAGCCACTACCGCCTCTCTACGGAAGAAGCACGCAGACAGTGTT
GCTGAACTCGGGGAACAGATTGACAACTTGCAAAGAGTCAAACAAAAGCTAGAGAAGGAAAAAGTAGAGTTAAAGTTGGA
ATTGGACGACCTTGCCTCAAACATGGAGAGTATTGTAAAAGCCAAGGTCAATCTAGAAAAGATGTGCCGATCACTTGAAG
ATCAGATGAATGAGCACAGGTCAAAAGCTGAAGAAGCCCAAAGAGCTCTTAATGACGTGTCAACACAGAAAGCGAAGCTT
CTGACTGAAAATGGTGAACTTGGACGTCAGCTGGAGGAGAAAGAATGTTTGATTTCCCAACTTACCCGAGGAAAGACTTC
CTACACGCAACAACTTGAAGACCTGAGAAGGCAACTTGAGGAAGAAGTAAAAGCAAAGAACGCTCTGGCTCATGCCGTAC
AGTCAGCACGTCATGATTGTGATTTACTCAGAGAGCAATTTGAAGAGGAACAAGAAGCAAAAGCCGAGCTCCAGCGAGCA
TTATCAAAGGCTAATACAGAGGTGGCAACATGGAGGGCGAGATATGAGACTGATGGCATTCAGAGAACCGAGGAACTGGA
GGACGCAAAGAAGAAACTTGTTCAGAAACTGCAAGAAGCAGAAGAAGCCGTGGAGGCGGTGAATGCAAAGTGTTCTTCAC
TGGAGAAAACCAAACATCGCCTGCAAAATGAGATTGAAGATTTGATGCTGGATCTTGAGCGGTCCAATGCGGCGTCCGCA
GCTCTGGATAAGAAACAGAGATCTTTCGATAAAGTCATGGCAGAGTGGAAGCAGAAATATGAAGAGTCACAATGTGAGCT
TGAAGGAGCGCAAAAAGAGGCTCGCAGTTTAAGCACTGAACTCTTCAAGCTGAAGAACTCCTATGAAGAAACTCTCGATC
ACCTAGAGACCATCAAAAGAGAAAACAAGAATCTACAGGAGGAGATCTCTGACTTGACGGATCAAGTAAGCGAAGGGCGA
AAGAGTGTCCATGAGTTGGAAAAACTGAGGAAGCAATTGGAACAGGAGAAAACGGAGTTGCAGTCGGCACTAGAAGAAGC
TGATGCTTCAGTCGAGCATGAAGAAGGTAAAATCTTACGGGCTCAGCTAGAGTTTAATCAACTCAAGGCAGATTTCGAGC
GCAAGATGTCTGAGAAGGATGAAGAAATGGAGCAAGCGAGGAGAAACTATCAGCGTATGATTGAATCCTTGCAAGCCTCT
CTTGAGGCAGAGACGAGAAGCCGTAATGAAGCCTTACGAGTGAAGAAGAAAATGGAGGGAGATCTTAACGAAATGGAAAT
TCAGTTAAGCCAAGCCAACAGACAGGCAGCTGATGCTCAAAAGCAGCTCAAGATGGTCCAATCATGCTTGAAAGAAACCC
AACTCCAGATGGACGACACTCTCCACAGTAATGATGACCTCAAAGAAAACATAACTCTACTGGAGCGTCGAAACAATCTC
ATGCAAACCGAATTAGAAGAACTCAGAGGCATTCTGGAGCAAACCGAAAGAGTTCGCAAACTTGCCGAGCAAGAACTCAC
CGATGCAACCGAACGGATGCAACTCCTGCACTCACAAAACACAGGCCTCATCAATCAAAAGAAGAAGCAAGAGTCGGATC
TTCTCCAGCTGCAAAACGAACTGGAGGAACTTGTGCAAGAGAACCGCAATGCTGAAGAGAAGGCAAAGAAGGCGATCACT
GATGCAGCGATGATGGCCGAAGAGTTGAAGAAGGAGCAAGACACGAGCGCACATCTTGAAAGGATGAAGAAGAATATGGA
GCAGACGATTAAGGATCTGCAACACCGTCTAGACGAAGCCGAGCAGGTAGCGATGAAAGGAGGGAAAAAGCAGCTACAAA
AAATGGAGGCGCGCATCCGTGAGCTTGAGAATGAGCTGGACGCTGAGCAAAAGAGAGGATCGGAGTCTGTTAAAGGGGTG
AGGAAATTCGAGCGGCGCATAAAAGAGCTGACCTATCAGACGGACGAGGATCGCAAGAATTTGGCTAGACTGCAAGATTT
GGTGGACAAGCTGCAGCTGAAGGTGAAATCCTACAAACGTTCGGCTGAAGAAGCCGAAGAGCTGGCCAATGCAAACACAG
CCAAATTACGAAAACTCCAACATGAGCTGGAAGAAGCAGAAGAGCGGGCGGACATCGCAGAATCACAAGTGAATAAACTG
CGTGCCAAAACTAGAGATGGCGCACCTGGAAAGAAAACTCAAGACGAGTAA

Alignment

ORF - retro_drer_2 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.06 %
• Parental protein coverage: 99.95 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGDAVMAEFGSAAPFLRKSDKERLEAQTRIFDMKKECFVPDPEVEYVKASITSRDGDKVTVDTEYGKTLT
          MGDA.MAEFG.AAPFLRKSDKERLEAQTR.FD.K.ECFV.D..VEYVK..I...DG.KVTV.TE.G.T.T
Retrocopy MGDALMAEFGKAAPFLRKSDKERLEAQTRAFDIKTECFVVDEKVEYVKGQIQNKDGGKVTVKTEDGRTVT

Parental  FKECDVHPQNPPKFDKIEDMAMFTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYDSSVVK
          .K..DVHPQNPPKFDKIEDMAM.TFLHEPAVLFNLKERY.AWMIYTYSGLFCVTVNPYKWLPVYD..VV.
Retrocopy VKDGDVHPQNPPKFDKIEDMAMLTFLHEPAVLFNLKERYTAWMIYTYSGLFCVTVNPYKWLPVYDADVVA

Parental  AYRGKKRTEAPPHIFSISDNAYQYMLSDRENQSVLITGESGAGKTVNTKRVIQYFASIAAVSGKKDAASE
          AYRGKKRTEAPPHIFSISDNAYQYML.DRENQSVLITGESGAGKTVNTKRVIQYFASIAA..G.......
Retrocopy AYRGKKRTEAPPHIFSISDNAYQYMLTDRENQSVLITGESGAGKTVNTKRVIQYFASIAAAGGSAGKKDS

Parental  KKGTLEDQIIQANPALEAFGNAKTIRNDNSSRFGKFIRIHFGVSGKLASADIETYLLEKSRVTYQLKAER
          .KGTLEDQIIQANPALEAFGNAKT.RNDNSSRFGKFIRIHFG.SGKL.SADIETYLLEKSRVT.QLK.ER
Retrocopy SKGTLEDQIIQANPALEAFGNAKTLRNDNSSRFGKFIRIHFGTSGKLSSADIETYLLEKSRVTFQLKSER

Parental  DYHIFYQILSQKKPELLEMLLITNNPYDYSYISQGETQVASIDDAEELIATDDAFDVLGFTQDEKSGIYK
          .YHIF.QILS..KPELL.MLLITNNPYDYSYISQGE..V.SI.D.EELIATD.AFDVLGFT..EK.G.YK
Retrocopy NYHIFFQILSNEKPELLDMLLITNNPYDYSYISQGEVTVSSINDNEELIATDKAFDVLGFTSEEKMGVYK

Parental  LTGAIMHFGNMKFKQKQREEQAEADGTEEDADKVAYLMGLNSADLIKGLCHPRVKVGNEWVTKGQNVQQV
          LTGAIMH.GNMKFKQKQREEQAE.DGTE.DADK.AYLMGLNSADL.KGLCHPRVKVGNE.VTKGQ.V.QV
Retrocopy LTGAIMHYGNMKFKQKQREEQAEPDGTE-DADKAAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQSVDQV

Parental  YYSIGALAKSVYEKMFLWMVVRINQSLDTKQPRQYFIGVLDIAGFEIFDFNTFEQLCINFTNEKLQQFFN
          YYSIGALAKSVYEKMF.WMVVRINQSLDTKQ.RQYFIGVLDIAGFEIFDFNTFEQLCINFTNEKLQQFFN
Retrocopy YYSIGALAKSVYEKMFNWMVVRINQSLDTKQHRQYFIGVLDIAGFEIFDFNTFEQLCINFTNEKLQQFFN

Parental  HHMFVLEQEEYKKEGIDWEFIDFGMDLQACIELIEKPMGIMSILEEECMFPKASDQTFKAKLYDNHLGKN
          HHMFVLEQEEYKKEGIDWEFIDFGMDLQ.CI.LIEKP.GIMSILEEECMFPKASDQTFKAKLYDNHLGK.
Retrocopy HHMFVLEQEEYKKEGIDWEFIDFGMDLQSCIDLIEKPLGIMSILEEECMFPKASDQTFKAKLYDNHLGKT

Parental  PTFQKPRIVKGRPEAHFALVHYAGTVDYNISNWLVKNKDPLNETVVGLFQKSTVKLLSFLFAGYSGADSA
          ..FQKPR.VKG..EAHFAL.HYAGTVDYNI..WLVKNKDPLNETVVGL.QKS..KLLS.LF..Y.G.D..
Retrocopy NIFQKPRAVKGKAEAHFALSHYAGTVDYNIAGWLVKNKDPLNETVVGLYQKSSLKLLSLLFSSYAGSDGG

Parental  QDSKGGKGGGKKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCLIPNETKTPGAMENPLVMHQLRCNG
          ..S.GGKG..KKKGSSFQTVSALHRENLNKLMTNL..THPHFVRCLIPNE.K.PG.M.N.LVMHQLRCNG
Retrocopy EKS-GGKGA-KKKGSSFQTVSALHRENLNKLMTNLKTTHPHFVRCLIPNESKIPGIMDNCLVMHQLRCNG

Parental  VLEGIRICRKGFPNRILYGDFKQRYRILNPSANPEGQFIDNKKAAEKLLGSLDIDHNQYKLGHTKVFFKA
          VLEGIRICRKGFPNRILYGDFKQRYRILN.SA.PEGQFI.NKK.AEKLLGSLDIDH.QYK.GHTKVFFKA
Retrocopy VLEGIRICRKGFPNRILYGDFKQRYRILNASAIPEGQFIENKKSAEKLLGSLDIDHTQYKFGHTKVFFKA

Parental  GLLGTLEEMRDDRLALIITGIQARARGILSRLEFQKIVERRDSLLVIQWNVRAFMGVKNWPWMKLYFKIK
          GLLGTLEEMRDD.LA.I.TGIQA.ARG.L.R.E.QK.VERRD.L.V.QWN.R.F.GVKNWPWMKL.FKIK
Retrocopy GLLGTLEEMRDDQLARILTGIQAFARGLLMRVEYQKLVERRDALMVVQWNLRSFLGVKNWPWMKLFFKIK

Parental  PLLKTAETEKEMANMKEEFTKLKEAYAKSEARKKELEEKMVSLLQEKNDLQLAVQSEQDNLVDAEERCEG
          PLLK.AE.EKEMANMK.EF.KLKEA..KS.AR.KELEEKMVSLLQEKNDL.L.VQSEQD.L.DAEERCE.
Retrocopy PLLKSAESEKEMANMKDEFNKLKEALEKSDARRKELEEKMVSLLQEKNDLLLQVQSEQDTLTDAEERCEQ

Parental  LIKSKIQLEAKAKELTERLEDEEEMNAELVAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKN
          LIKSKIQLEAK.KEL.ER.EDEEE.NA.L.AK.RKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKN
Retrocopy LIKSKIQLEAKVKELSERIEDEEEINADLTAKRRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKN

Parental  LTEEMAALDEIIAKLTKEKKALQEAHQQTLDDLQSEEDKVNTLTKAKAKLEQQVDDLEGSLEQEKKLRMD
          .TEEMA.LDE.I.KLTKEKKALQEAHQQTLDDLQSEEDKVNTLTKAK.KLEQQVDDLEGSLEQEKK.RMD
Retrocopy ITEEMASLDENIMKLTKEKKALQEAHQQTLDDLQSEEDKVNTLTKAKVKLEQQVDDLEGSLEQEKKVRMD

Parental  LERAKRKLEGDLKLTQESIMDLENDKQQMEEKLKKKDFEISQLNSKIEDEQALGAQLQKKLKELQARIEE
          LER.KRKLEGD.KLTQE..MDLENDKQQ.E.KLKKKDFEI.QLN..IEDEQ....QLQKKLKE.QARIEE
Retrocopy LERSKRKLEGDVKLTQENVMDLENDKQQLEDKLKKKDFEINQLNQRIEDEQMASVQLQKKLKENQARIEE

Parental  LEEELEAERAARAKVEKQRADLSRELEEISERLEEAGGATAAQIEMNKKREAEFQKLRRDLEEATLQHEA
          LEEEL.AERAARAKVEKQR.D.SRELE.ISERLEEAGGAT.AQ.E.NKKR.AEFQK.RRDLEE.TLQHEA
Retrocopy LEEELDAERAARAKVEKQRSDISRELEDISERLEEAGGATSAQVELNKKRDAEFQKIRRDLEESTLQHEA

Parental  TAATLRKKHADSVADLGEQIDNLQRVKQKLEKEKSELKLELDDVVSNMEQIVKSKSNLEKMCRTLEDQMS
          T.A.LRKKHADSVA.LGEQIDNLQRVKQKLEKEK.ELKLELDD..SNME.IVK.K.NLEKMCR.LEDQM.
Retrocopy TTASLRKKHADSVAELGEQIDNLQRVKQKLEKEKVELKLELDDLASNMESIVKAKVNLEKMCRSLEDQMN

Parental  EYRTKAEEGQRTINDFTMQKAKLQTENGELSRQLEEKDSLVSQLTRGKQSYTQQIEDLKRQLEEEVKAKN
          E.R.KAEE.QR..ND...QKAKL.TENGEL.RQLEEK..L.SQLTRGK.SYTQQ.EDL.RQLEEEVKAKN
Retrocopy EHRSKAEEAQRALNDVSTQKAKLLTENGELGRQLEEKECLISQLTRGKTSYTQQLEDLRRQLEEEVKAKN

Parental  ALAHAVQSARHDSDLLREQFEEEQEAKAELQRSLSKTNSEVAQWRTKYETDAIQRTEELEDAKKKLAQRL
          ALAHAVQSARHD.DLLREQFEEEQEAKAELQR.LSK.N.EVA.WR..YETD.IQRTEELEDAKKKL.Q.L
Retrocopy ALAHAVQSARHDCDLLREQFEEEQEAKAELQRALSKANTEVATWRARYETDGIQRTEELEDAKKKLVQKL

Parental  QEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKVLAEWKQKYEESQTEL
          QEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLM.D.ERSNAA.AALDKKQR.FDKV.AEWKQKYEESQ.EL
Retrocopy QEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMLDLERSNAASAALDKKQRSFDKVMAEWKQKYEESQCEL

Parental  ESAQKESRSLSTELFKLKNSYEEVLDQLETMKRENKNLQEEISDLTEQLGETGKSIHELEKIRKQLEQEK
          E.AQKE.RSLSTELFKLKNSYEE.LD.LET.KRENKNLQEEISDLT.Q..E..KS.HELEK.RKQLEQEK
Retrocopy EGAQKEARSLSTELFKLKNSYEETLDHLETIKRENKNLQEEISDLTDQVSEGRKSVHELEKLRKQLEQEK

Parental  AEIQTALEEAEGSLEHEEGKILRAQLEFNQVKADIERKLSEKDEEMEQAKRNQQRVVDTLQSSLESETRS
          .E.Q.ALEEA..S.EHEEGKILRAQLEFNQ.KAD.ERK.SEKDEEMEQA.RN.QR....LQ.SLE.ETRS
Retrocopy TELQSALEEADASVEHEEGKILRAQLEFNQLKADFERKMSEKDEEMEQARRNYQRMIESLQASLEAETRS

Parental  RNEALRLKKKMEGDLNEMEIQLSQANRQASEAQKQLKGLHGHLKDAQLQLDDALRGNDDLKENIAIVERR
          RNEALR.KKKMEGDLNEMEIQLSQANRQA..AQKQLK.....LK..QLQ.DD.L..NDDLKENI...ERR
Retrocopy RNEALRVKKKMEGDLNEMEIQLSQANRQAADAQKQLKMVQSCLKETQLQMDDTLHSNDDLKENITLLERR

Parental  NNLLQAELDELRSLVEQTERGRKLAEQELMDVSERVQLLHSQNTSLLNQKKKLEGDNTQLQTEVEEAVQE
          NNL.Q.EL.ELR...EQTER.RKLAEQEL.D..ER.QLLHSQNT.L.NQKKK.E.D..QLQ.E.EE.VQE
Retrocopy NNLMQTELEELRGILEQTERVRKLAEQELTDATERMQLLHSQNTGLINQKKKQESDLLQLQNELEELVQE

Parental  CRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAMKGGKKQVQKLEA
          .RNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQ.AMKGGKKQ.QK.EA
Retrocopy NRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQVAMKGGKKQLQKMEA

Parental  RVRELENEVELEQRKASESVKGVRKYERRIKELTYQTEEDRKNLARLQDLVDKLQLKVKSYKRAAEEAEE
          R.RELENE...EQ...SESVKGVRK.ERRIKELTYQT.EDRKNLARLQDLVDKLQLKVKSYKR.AEEAEE
Retrocopy RIRELENELDAEQKRGSESVKGVRKFERRIKELTYQTDEDRKNLARLQDLVDKLQLKVKSYKRSAEEAEE

Parental  QANSNLGKFRKLQHELDEAEERADIAESQVNKMRAKSRDSGP-KKGHDE
          .AN.N..K.RKLQHEL.EAEERADIAESQVNK.RAK.RD..P.KK..DE
Retrocopy LANANTAKLRKLQHELEEAEERADIAESQVNKLRAKTRDGAPGKKTQDE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Danio rerio was not studied using RNA-Seq expression data.

ChIP-Seq

Danio rerio was not studied using ChIP-Seq data.

EST

53 EST(s) were mapped to retro_drer_2 retrocopy

EST ID	Start	End	Identity	Match	Mis-match	Score
AI878213	53930695	53931271	99.7	574	2	572
AW454123	53932548	53932682	97.8	131	3	128
BM280081	53930643	53931005	99.2	361	0	360
CN178347	53929693	53930408	99.8	712	2	709
EB872128	53927875	53928196	100	321	0	321
EB883394	53928013	53928615	99.9	600	1	599
EB883482	53928339	53928816	99.8	475	1	474
EB885043	53928716	53929074	99.8	357	1	356
EB885421	53929796	53930414	99.9	617	1	616
EB886575	53928879	53929059	100	179	0	179
EB886851	53928055	53928615	100	560	0	560
EB887227	53928528	53928861	100	333	0	333
EB887278	53929419	53929920	100	501	0	501
EB887346	53929669	53929919	99.2	248	2	246
EB887585	53929111	53929270	100	148	0	139
EB887612	53928025	53928595	100	570	0	570
EB887742	53928339	53928963	100	623	0	623
EB888082	53928258	53928766	100	508	0	508
EB888536	53931495	53932068	100	572	0	572
EB888963	53930172	53930680	100	508	0	508
EB889003	53930222	53930680	99.8	457	1	456
EB889221	53931678	53932170	99.8	491	1	490
EB889371	53930650	53931373	99.9	722	1	721
EB889414	53927327	53927753	98.9	426	0	424
EB890228	53930571	53931000	99.8	428	1	427
EB890447	53932311	53932786	99.8	474	1	473
EB890496	53927530	53928049	99.5	519	0	518
EB891325	53927315	53927785	100	470	0	470
EB891536	53930103	53930603	99.8	499	1	498
EB892003	53927766	53928292	99.5	526	0	525
EB892714	53930172	53930680	100	508	0	508
EB893215	53932541	53932721	100	180	0	180
EB894318	53930601	53931210	100	608	0	608
EB895014	53928510	53928849	98	332	7	325
EB895079	53930523	53930954	99.8	430	1	429
EB895182	53931606	53931766	99.4	158	1	156
EB895199	53932128	53932619	100	490	0	490
EB895454	53931198	53931817	100	619	0	619
EB895738	53930750	53931393	99.9	641	1	640
EB895886	53930764	53931404	100	640	0	640
EB896254	53931003	53931377	99.5	372	2	370
EB896744	53932523	53932833	99.4	303	2	301
EB896841	53927320	53927769	99.2	448	1	446
EB897525	53931113	53931663	100	549	0	549
EB897968	53927326	53927704	100	377	0	376
EB897977	53931003	53931448	100	443	0	442
EB898049	53927665	53928091	99.8	422	1	421
EB898523	53930859	53931025	100	166	0	166
EB899030	53928550	53928774	99.6	222	1	221
EB899209	53931003	53931541	100	538	0	538
EB899261	53930854	53931450	99.9	595	1	594
EB899684	53927434	53927661	99.2	225	2	223
EB899764	53931953	53932603	100	649	0	649

TSS

Danio rerio was not studied using FANTOM5 data.

Lab

retro_drer_2 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_drer_2 has 0 orthologous retrocopies within teleost group .

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Danio rerio	ENSDARG00000071430	1 retrocopy	retro_drer_2 ,
Gadus morhua	ENSGMOG00000009387	1 retrocopy	retro_gmor_5,
Oreochromis niloticus	ENSONIG00000008086	1 retrocopy	retro_onil_30,
Tetraodon nigroviridis	ENSTNIG00000003838	1 retrocopy	retro_tnig_26,