RetrogeneDB ID:

retro_dord_87

Retrocopy
location
Organism:Kangaroo rat (Dipodomys ordii)
Coordinates:GeneScaffold_2592:52911..53505(-)
Located in intron of:ENSDORG00000007558
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:Mettl8
Ensembl ID:ENSDORG00000013075
Aliases:None
Description:methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]


Retrocopy-Parental alignment summary:






>retro_dord_87
AGAAGAAAGTCTTAAGAAAGTTCAGCTGTGCAAGTCCTTCTAGAAAAGCAAGTTAAGTATGAAAGTGAAGCTAACAAATA
TTGGGACACATTTTACAAGATTCACAAGAATAAGTTTTTCAAGAATCGTAATTGGCTGTTGAGGGAATTTCCTGAAATTC
ATTCAGTTGATCAAAAGATGGAAGAGAACGTAGAAGAGTTCTCATGGGATCATGTCAAGACTAATGCTGCAGATTGTTTC
TCAAGAAAACAAGAACAAAAAAAAATCAAGAAAAATGGTTTATCAGATGGTCAAAGCCAACCGAGGTCTGATCTTTCCCA
TTGGAGCCTGAAGAAGCCAGGAAAGAGGTTCAGAAGACTGAAGTGTTTCCTGGTAGCAATACCACTTGCAGAATACTGGA
GGTTGGCTGTGGTGCTGGAAGCAGTGTTTTTCCAATTCTGAACACCTTGCAGAATCTTCCAAAATCCTTTCTCTATTGTT
GTGATTTTGCCTCTGGAGCTGTGGAGCTTGTCAAAGGCACACTTATCCTACAGGGCTGCCCAGCGTTCTACCTTTGTGCA
CGAGGTGTGTGATGATGGCTTGCCCTACCCTTTC

ORF - retro_dord_87 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.59 %
Parental protein coverage: 53.07 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalRKKVEENSAVQVILEKQVKYESEASKYWDTFYKIHKNKFFKNRNWLLREFPEILPIDQKIEENVEELSWD
R.K..E.SAVQV.LEKQVKYESEA.KYWDTFYKIHKNKFFKNRNWLLREFPEI...DQK.EENVEE.SWD
RetrocopyRRKS*ESSAVQVLLEKQVKYESEANKYWDTFYKIHKNKFFKNRNWLLREFPEIHSVDQKMEENVEEFSWD
ParentalHVKTNAADCFSGKQEQKKHLKKNGLSDGQSQLRSDFSN-LEAEEARKELQKTEVFPGSNATFRILEVGCG
HVKTNAADCFS.KQE.....KKNGLSDGQSQ.RSD.S..LE.EEARKE.QKTEVFPGSN.T.RILEVGCG
RetrocopyHVKTNAADCFSRKQE-XXXXKKNGLSDGQSQPRSDLSH<LEPEEARKEVQKTEVFPGSNTTCRILEVGCG
ParentalAGSSVFPILNTLQNLPESFLYCCDFASRAVELV-KAHSSYRASQCSAFVHDICEDGLPYPF
AGSSVFPILNTLQNLP.SFLYCCDFAS.AVELV.KAH.SYRA.Q.S.FVH..C.DGLPYPF
RetrocopyAGSSVFPILNTLQNLPKSFLYCCDFASGAVELV>KAHLSYRAAQRSTFVHEVCDDGLPYPF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide