RetrogeneDB ID:

retro_dord_774

Retrocopy
location
Organism:Kangaroo rat (Dipodomys ordii)
Coordinates:scaffold_8911:7159..7568(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:H3f3b
Ensembl ID:ENSDORG00000008132
Aliases:None
Description:H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]


Retrocopy-Parental alignment summary:






>retro_dord_774
ATGGCTCGCACCAAGCAGACCGCCCGCAAGTCCACCGGGGGGCCAGGCGCCCAGGAAGCAGCTGGCGATCAAGGCCTCGC
GCAAGAGCGCGCCCTCCACTGGAGGGGTGAAGAAACTGCACCGCTACAGGCCTGGTGCTGTGGCGCTCCGTGAAATGAGA
CGCTACCAGAAGTGCACAGAACTTCTGATTCGCAAGCTCCCTTCCCAGCGTCTGGTGCGAGACATTGCTCAGGACTTCAA
AACAGACCTGCGCTTCCAGAGCGCAGCAGTGGGTGCTTTGCAGGAGGCGAGTGAGGCCTATCTCGTTGGCCTTTCTGAAG
ATACCAATCTGTGTGCTATCCATGCCAAACGTGTGACAATTATGCCAAAAGATATCCAGCTAGCACGCCACATACGTGGA
GAACGAGCT

ORF - retro_dord_774 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.51 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMARTKQTARKSTGG-KAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ
MARTKQTARKSTGG..APRKQLA.KA.RKSAPSTGGVKK.HRYRPG.VALRE.RRYQK.TELLIRKLP.Q
RetrocopyMARTKQTARKSTGG>QAPRKQLAIKASRKSAPSTGGVKKLHRYRPGAVALREMRRYQKCTELLIRKLPSQ
ParentalRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
RLVR.IAQDFKTDLRFQSAA.GALQEASEAYLVGL.EDTNLCAIHAKRVTIMPKDIQLAR.IRGERA
RetrocopyRLVRDIAQDFKTDLRFQSAAVGALQEASEAYLVGLSEDTNLCAIHAKRVTIMPKDIQLARHIRGERA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Dipodomys ordii was not studied using RNA-Seq expression data.