RetrogeneDB ID:

retro_dord_491

Retrocopy
location
Organism:Kangaroo rat (Dipodomys ordii)
Coordinates:scaffold_23117:770..1146(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:Ccdc25
Ensembl ID:ENSDORG00000006595
Aliases:None
Description:coiled-coil domain containing 25 [Source:MGI Symbol;Acc:MGI:1914429]


Retrocopy-Parental alignment summary:






>retro_dord_491
TGCAAGATGAACAACATTAATGTGGTATACACGCCATAATCTAACCTGAAGAAACAGCTGACATGGATTTGGGGCAGATA
GCTCTTCTCAGGGAGAAGGATGTAAAAATTGTGACAATCGAGAATAAAGTGAATTAGATCCTGAATCAATTAGAAAAGAC
TAAATCAGAGTGGTTCCCAGACGTGGCAGCACAGAGAGAGATAGACCATGAAGAGAGAAATGAGAAAAAAAAGCCCAGAT
TCAGGAAATCAAAAGGAGAGAGAAAGAAGAGATGATGAAGAAGAAGGAAACAGAGAAACTAAAGAGGTATTCATTCCTAA
TGAAAGTTGAGAACACATCTTCAAATCAGGATGGGCAAGATTCCAATGAATTCATG

ORF - retro_dord_491 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 60.94 %
Parental protein coverage: 63.64 %
Number of stop codons detected: 4
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalCKMNNVNVVYTPWSNLKK-TADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKSERFPDLAAEKE-G
CKMNN.NVVYTP.SNLKK.TADMD.GQI...R.KDVKIVT.E.KVN.ILN.LEKTKSE.FPD.AA..E..
RetrocopyCKMNNINVVYTP*SNLKK<TADMDLGQIALLREKDVKIVTIENKVN*ILNQLEKTKSEWFPDVAAQRE<D
ParentalRDREERNEKKAQIQEMKRREKEEMKKKREMDELRSYSSLMKVENMSSNQDGNDSDEFM
R...E.....AQIQE....................YS.LMKVEN.SSNQDG.DS.EFM
RetrocopyRP*REK*XXXAQIQEIXXXXXXXXXXXXXXXXXXXYSFLMKVENTSSNQDGQDSNEFM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Dipodomys ordii was not studied using RNA-Seq expression data.