RetrogeneDB ID: retro_dnov_46

Retrocopy location

• Organism: Armadillo (Dasypus novemcinctus)
• Coordinates: scaffold_36882:54387..55047(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSDNOG00000014222
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSDNOG00000007885
• Aliases: None
• Description: None

Sequence

>retro_dnov_46
ATGGCGATTTTTAGTGTGTTTGTGGTGAACAAAGCTGGCGGCCTAATTTACCAGTTGGACAGCTACACACCTCGAGCTGA
GGCTGAAAAAACTTTCAGTTTCCCGCTCGATCTCCTGCTCAAGCTGCACGACGAGCGTGTGCTGGTTGCCTTCGGCCAGC
GCGATGGCCTCCGGGTGGGCCACGCAGTGCTGGCCATCAATGGCATGGATGTGAACGGCAAGTACACGGCAGACGGGAAA
GAGGTGCTGGAGTACCTGGGCAACCCTGCGAATTATCCGGTGTCCATTCGATTCGGCCGGCCCCGCCTCACCTCCAATGA
GAAACTCATGCTAGCCTCCATGTTCCACTCGCTCTTTGCCATTGGCTCCCAGCTGTCTCCTGAACAGGGCAGCTCAGGCA
TTGAGATGCTAGAGACAGATACATTCAAACTGCACTGCTTCCAGACGCTGACAGGGATCAAGTTTGTGGTGCTGGCAGAC
CCTAGGCAAGCTGGAATCGATTCCCTTCTCCGAAAGATTTATGAAATTTATTCAGACTTTGCCCTCAAGAATCCATTCTA
CTCCCTGGAAATGCCTATCAGGTGTGAGCTGTTTGACCAGAACCTGAAGCTAGCCCTGGAGGTGGCAGAGAAGGCTGGGA
CTTTTGGACCTGGATCATAG

Alignment

ORF - retro_dnov_46 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.09 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAIFSVFVVNKAGGLIYQLDSYSPRAEAEKTFSFPLDLLLKLHDERVLVAFGQRDGIRVGHAVLAINGMD
          MAIFSVFVVNKAGGLIYQLDSY.PRAEAEKTFSFPLDLLLKLHDERVLVAFGQRDG.RVGHAVLAINGMD
Retrocopy MAIFSVFVVNKAGGLIYQLDSYTPRAEAEKTFSFPLDLLLKLHDERVLVAFGQRDGLRVGHAVLAINGMD

Parental  VNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETD
          VNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETD
Retrocopy VNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETD

Parental  TFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAE
          TFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAE
Retrocopy TFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAE

Parental  KAGTFGPGS
          KAGTFGPGS
Retrocopy KAGTFGPGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012922_ascending_colon	0.58 RPM	166.85 RPM
SRP012922_cerebellum	0.00 RPM	39.04 RPM
SRP012922_heart	0.23 RPM	39.91 RPM
SRP012922_kidney	0.27 RPM	135.25 RPM
SRP012922_liver	0.15 RPM	117.65 RPM
SRP012922_lung	0.31 RPM	133.94 RPM
SRP012922_quadricep_muscle	0.17 RPM	39.81 RPM
SRP012922_spleen	0.34 RPM	117.21 RPM

ChIP-Seq

Dasypus novemcinctus was not studied using ChIP-Seq data.

EST

Dasypus novemcinctus was not studied using EST data.

TSS

Dasypus novemcinctus was not studied using FANTOM5 data.

Lab

retro_dnov_46 was not experimentally validated.

Homology

Retrocopy orthology:

Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000012383	1 retrocopy	retro_cfam_760,
Callithrix jacchus	ENSCJAG00000013703	1 retrocopy	retro_cjac_450,
Dasypus novemcinctus	ENSDNOG00000007885	1 retrocopy	retro_dnov_46 ,
Myotis lucifugus	ENSMLUG00000004759	1 retrocopy	retro_mluc_1438,
Ictidomys tridecemlineatus	ENSSTOG00000014340	1 retrocopy	retro_itri_1252,