RetrogeneDB ID: retro_dnov_21

Retrocopy location

• Organism: Armadillo (Dasypus novemcinctus)
• Coordinates: scaffold_77335:1192..2227(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSDNOG00000006518
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSDNOG00000017221
• Aliases: None
• Description: None

Sequence

>retro_dnov_21
ATGCCTCGCGGTCAGAAGAGTAAGCTCCGTGCCCGTGAGAAACGCCGCCAGGCCCATGGTGAGACCTTGGGTCTCCAGGG
TGCTCAAGCCCCTGCAGCAGCAGAAGATAAGATCCTGTCCTCCTCTCTTGTTTTTGAGGGTACTCCTCAGAACTCCTCTT
ATGCTGGCAGTCCCCAGGGGCCTCAGAGATCCCCATTCACCACCACTTCTGCTGCAGCTATTTCATGCATAACATCTGAT
GAAGGTGCCAAAGGCCAAGACGAGGAAAGTCCAAGTTCTTTCCAGGTCCCGGCCTCCACTAAGAGCTCCCGCAAAGATCC
TCTAACCAGGAAGGCAGGTATGCTGGTGCAGTTCCTGTTATACAAGTATAAAATGAAAGAGCCCATTACAAAGGCGGACA
TGCTGAAGATTGTCAACAGGAAGTACAAGGATCACTTCCCTGAGATCCTCAAGAGAACTTCTGAGCGCATGGAGCTAATC
TTTGGCCTTGACCTTAAACAAGAGGACTCCAGAGGTCAATCTTATGCCCTTGTCAGCAAACTGGACCTCACCAATGAAGA
AAATCTGAGTGGTGCCTGGGGGTTTCCCAAGAGTGGTCTTCTAATGCCTCTCTTAGGTGTGATCTTCATTAATGGTAACT
GTGCCACTGAGGAAGAGATCTGGGAATTCCTAAATATGTTGGGCATCTATGATGGAAAGAGACACTTCATCTTTGGGGAT
ACCAGGAAGCTCATCACCAGAGATTTGGTGAGGGAAAAATACCTGGAGTACCGGCAGGTGCCCAACACTGATCCTCCACG
CTATGAATTCCTGTGGGGTCCAAGGGCCCATGCTGAAACCAGCAAGATGAAAGTTCTAGAATTTTTGGCCAAGGTAAATG
ATACCGTCCCCAGTGCTTTCCAGTCGCGATATGAAGAGGCTTTGAGAGATGAGGAAGCAAGGGCTGGAGCTAGAGTTGCA
GGCAGGGCTGGCAGTATTGCCATAGCCAGGGCACTTCCCAGGATCAGGATCAGCTGTTTCTCCCGCTTCAAGTGA

Alignment

ORF - retro_dnov_21 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.91 %
• Parental protein coverage: 96. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPRSQKSKLRYREKRRQAREETQGPHGAQASVEVKEEAPCSPSVVSGGSPQSSPAAGHPEEPPRSLSPLT
          MPR.QKSKLR.REKRRQA..ET.G..GAQA..........S.S.V..G.PQ.S..AG.P..P.RS..P.T
Retrocopy MPRGQKSKLRAREKRRQAHGETLGLQGAQAPAAAEDKI-LSSSLVFEGTPQNSSYAGSPQGPQRS--PFT

Parental  LAAAVSGPRAEEEAESRGEAPGSPEATGSPEAPGSPEGSRRDPLSRKAALVLQFLLNKYKLKQPILKADM
          ...A.............G....SP....S...P.S...SR.DPL.RKA....QFLL.KYK.K.PI.KADM
Retrocopy TTSAAAISCITSDEGAKGQDEESPS---SFQVPASTKSSRKDPLTRKAGMLVQFLLYKYKMKEPITKADM

Parental  LKLIRRKYKEQFPEILRMCSERLELVFGLDLKEHDASAQSYLLVSKLD-PSETNLSGGWGLPRNGLLLPL
          LK...RKYK..FPEIL...SER.EL.FGLDLK..D...QSY.LVSKLD...E.NLSG.WG.P..GLL.PL
Retrocopy LKIVNRKYKDHFPEILKRTSERMELIFGLDLKQEDSRGQSYALVSKLDLTNEENLSGAWGFPKSGLLMPL

Parental  LGVIFLNGNCAPEEEIWQFLSLLGVYKGRRHFIFGDPWKLITRDLVREKYVEYRQVAQSSPPRYEFLWGP
          LGVIF.NGNCA.EEEIW.FL..LG.Y.G.RHFIFGD..KLITRDLVREKY.EYRQV....PPRYEFLWGP
Retrocopy LGVIFINGNCATEEEIWEFLNMLGIYDGKRHFIFGDTRKLITRDLVREKYLEYRQVPNTDPPRYEFLWGP

Parental  RAHAVTSKMKVLEFLAKVNDTVPSAFHSHYEEALKDEEERAQARAAARAGATAKAMA
          RAHA.TSKMKVLEFLAKVNDTVPSAF.S.YEEAL.DEE.RA.AR.A.RAG..A.A.A
Retrocopy RAHAETSKMKVLEFLAKVNDTVPSAFQSRYEEALRDEEARAGARVAGRAGSIAIARA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012922_ascending_colon	0.00 RPM	0.00 RPM
SRP012922_cerebellum	0.00 RPM	0.00 RPM
SRP012922_heart	0.00 RPM	0.00 RPM
SRP012922_kidney	0.00 RPM	0.00 RPM
SRP012922_liver	0.00 RPM	0.00 RPM
SRP012922_lung	0.15 RPM	0.00 RPM
SRP012922_quadricep_muscle	0.00 RPM	0.00 RPM
SRP012922_spleen	0.11 RPM	0.00 RPM

ChIP-Seq

Dasypus novemcinctus was not studied using ChIP-Seq data.

EST

Dasypus novemcinctus was not studied using EST data.

TSS

Dasypus novemcinctus was not studied using FANTOM5 data.

Lab

retro_dnov_21 was not experimentally validated.

Homology

Retrocopy orthology:

Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000017221	1 retrocopy	retro_dnov_21 ,