RetrogeneDB ID: retro_dnov_1625

Retrocopy location

• Organism: Armadillo (Dasypus novemcinctus)
• Coordinates: scaffold_249104:41..733(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ALDOB
• Ensembl ID: ENSDNOG00000014816
• Aliases: None
• Description: aldolase B, fructose-bisphosphate [Source:HGNC Symbol;Acc:417]

Sequence

>retro_dnov_1625
CAACTTCTGGATGGGCTTTCTGAGCACTGAACCCAGTACAAGAAAGGGAGAAGTGACTTGGAAAAGTGGAGCTGTGTGCT
GAAGATCAGGATGCATACCCCCTCTGCCCTTACCATCATGGAGAACATCACTGTGCTGGCCCATTCTGACAACATCTACC
AGCAAAGTGGCATCATGCCCATCATGGAGCCAGAGATCCTCCCCAATGGGGACCATGACTTGAAGCGCTGTCTGTATGTA
ACCAAGAAGGTGCTGGCTGCTGTTTATAAGGCTCTGAGTGACCACATCTACCTGGAAGGCAGTTTGCTGAAGCCCGATAT
GGTGACCCCAGGGCATGCCTGCACCCAGAAGTTTTCTTTTGAACAGATTGCTATGTCAGTTGTCACAGCACTGCACTGCA
CAGTGCCCCCTGCTGTCCCTGGAGTCACCTTCCTCTCTGGAGGCCAGTCTGAGGAGGAGGCATCCATCGACCTCAATGCC
ATCAACAAGTGCCCCCTGCCAAAGTTGTGGGCCCTGACCTTCTCTTATAGCTGTGCCATGCAGACCTCTTCCCTGAAGGC
CTGGAGTGGGAAGAAGAGAACCAGAAAGTTGCCCAGAAAGTGTGTGTCAAGCAAGCCCTGGCCAACAGCCTCATCTGCCA
AGGAAAGTACATCCCAAGTGGTCAGGCCAGGGCTGCAGCTATCGAGTTCCTT

Alignment

ORF - retro_dnov_1625 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.22 %
• Parental protein coverage: 71.17 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QGLDGLSERCAQYKKDGADFGKWRAVLRIADQCPSNLAIQENAYTLARYASICQQNGLVPIVEPEVIPDG
          Q.LDGLSE...QYKK...D..KW..VL.I....PS.L.I.EN...LA....I.QQ.G..PI.EPE..P.G
Retrocopy QLLDGLSEH*TQYKKGRSDLEKWSCVLKIRMHTPSALTIMENITVLAHSDNIYQQSGIMPIMEPEILPNG

Parental  DHDMEHCQYVTEKVLAAMYKALNDHHVYLEGTLLKPNMVTAGHACTKKYTPEQVAMATVTALHRTVPAAV
          DHD...C.YVT.KVLAA.YKAL.DH..YLEG.LLKP.MVT.GHACT.K...EQ.AM..VTALH.TVP.AV
Retrocopy DHDLKRCLYVTKKVLAAVYKALSDH-IYLEGSLLKPDMVTPGHACTQKFSFEQIAMSVVTALHCTVPPAV

Parental  PGICFLSGGMSEEDATLNLNAINLCPLPRPWKLSFSYGRALQASALAAWNGK-AANKKATQEAFMKRAVA
          PG..FLSGG.SEE.A...LNAIN.CPLP..W.L.FSY..A.Q.S.L.AW.GK...N.K..Q....K.A.A
Retrocopy PGVTFLSGGQSEEEASIDLNAINKCPLPKLWALTFSYSCAMQTSSLKAWSGK<EENQKVAQKVCVKQALA

Parental  NHQAAEGQYVHTGSSGAASTQSL
          N.....G.Y...G...AA....L
Retrocopy NSLICQGKYIPSGQARAAAIEFL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012922_ascending_colon	5.45 RPM	20.03 RPM
SRP012922_cerebellum	2.34 RPM	3.16 RPM
SRP012922_heart	7.19 RPM	1.86 RPM
SRP012922_kidney	3.29 RPM	2862.53 RPM
SRP012922_liver	0.31 RPM	2041.13 RPM
SRP012922_lung	1.07 RPM	91.63 RPM
SRP012922_quadricep_muscle	78.58 RPM	2.94 RPM
SRP012922_spleen	1.37 RPM	3.89 RPM

ChIP-Seq

Dasypus novemcinctus was not studied using ChIP-Seq data.

EST

Dasypus novemcinctus was not studied using EST data.

TSS

Dasypus novemcinctus was not studied using FANTOM5 data.

Lab

retro_dnov_1625 was not experimentally validated.

Homology

Retrocopy orthology:

Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000014816	5 retrocopies	retro_dnov_1625 , retro_dnov_1631, retro_dnov_2028, retro_dnov_2152, retro_dnov_547,
Echinops telfairi	ENSETEG00000017395	2 retrocopies	retro_etel_2089, retro_etel_945,
Monodelphis domestica	ENSMODG00000014418	2 retrocopies	retro_mdom_1752, retro_mdom_393,
Tupaia belangeri	ENSTBEG00000009298	1 retrocopy	retro_tbel_3244,