RetrogeneDB ID: retro_dmel_77

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: X:18633310..18633757(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0030951
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: tsr
• Ensembl ID: FBgn0011726
• Aliases: None
• Description: twinstar [Source:FlyBase gene name;Acc:FBgn0011726]

Sequence

>retro_dmel_77
ATGGCATCTGGAATTAATTTGAGCCGCGAGTGTCAGCACGTGTTCGAGCAGATCCGGAAGCTGAAGCAACATCGCTACGC
GGTCTTCGTCATCCAGGACGAGCGGGAGATTAAGGTGGAGGTGCTTGGAGTAAGGGAGGCGAACTACGACGACTTCCTGG
CGGATCTGCAACGTGCCGGATCCAATCAGTGCCGATTCGCTGTCTACGACTATGAGTATCAGCACCAGTGCCAGGGCACC
TTGTCCACCTGCCTGAAGGAGAAGCTAATCCTGATGCTCTGGTGTCCCACTCTGGCCAGGATCAAGGACAAGATGCTCTA
CTCCAGCACGTTTGCGGTGCTCAAGCGAGAGTTTCCCGGCGTCCAGAAGTGCATTCAGGCCACCGAACCGGAGGAGGCGT
GCCGCAATGCTGTCGAGGAGCAGCTGCGCTCCTTGGACAGGGAGTAG

Alignment

ORF - retro_dmel_77 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.7 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASGVTVSDVCKTTYEEIKKDKKHRYVIFYIRDEKQIDVETVADRNAEYDQFLEDIQKCGPGECRYGLFD
          MASG...S..C....E.I.K.K.HRY..F.I.DE..I.VE....R.A.YD.FL.D.Q..G...CR....D
Retrocopy MASGINLSRECQHVFEQIRKLKQHRYAVFVIQDEREIKVEVLGVREANYDDFLADLQRAGSNQCRFAVYD

Parental  FEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEE
          .EY.HQCQGT.....K.KL.LM.WCP..A..K.KMLYSS.F..LK....GVQK.IQAT...EA.R.AVEE
Retrocopy YEYQHQCQGTLSTCLKEKLILMLWCPTLARIKDKMLYSSTFAVLKREFPGVQKCIQATEPEEACRNAVEE

Parental  KLRATDRQ
          .LR..DR.
Retrocopy QLRSLDRE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_77 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_77 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Drosophila melanogaster	FBgn0011726	1 retrocopy	retro_dmel_77 ,