RetrogeneDB ID: retro_dmel_62

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 3R:25028422..25029457(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0039651
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CG4769
• Ensembl ID: FBgn0035600
• Aliases: None
• Description: None

Sequence

>retro_dmel_62
ATGGCCAACAAATTCAGGAGTCTGAACAGCAAACTTTTCCAGCTGGCCATGAGCGGCATCCAGCGGACATCGGTGCGTCC
GCGGATAAGTTTTCCGGGTCGTGGAAGCGGCTTTACTGGAAATCGCAAGCTGCTGGGAGCCCTGGGAGCCCTAACCGGAA
CAGCAGGGCTGCTGATCTACGCCCTGGAAACCAGCGTGGATGCCTCCTCGGACTGCGTGCATCCGGCCCACCAGCACTGG
AATCACAAAGGGCTTTTGTCCGCCTTGGACAAGGAGAGCGTGCGTCGAGGTTACACCGTTTACAAGGAGGTCTGCTCCTC
CTGCCACTCATTGCAGTACATGGCCTATCGCAACCTGGTGGGAGTGTGCATGACGGAGGCGGAGGCCAAGGCCGAGGCGG
AGGCCATCACGGTGCGGGATGGGCCCAACGAGGAGGGCGAGTACTACGAGCGTCCCGGCAAGCTGTCCGATCACTTCCCC
TCTCCGTACGCCAACGAGGAGGCGGCCCGTTCCGCCAACAATGGCTCCTATCCGCCGGATCTCAGCTATATTGTGTCGGC
TCGCAAGGGCGGCGAGGATTACGTGTTCTCCCTGCTCACCGGATACTGTGATCCTCCGGCTGGTTTTGCCCTTCGTGATG
GACTGTACTTCAATCCGTACTTCTCGGGCGGAGCGATTGCCATGGGCAAGGTAGTTGACAATGAGGTGGTCTCCTTTGAA
GATCCAAATGTGCCTGCTTCGGCCGCCCAAATTGCCAAGGATGTGTGCGTCTTCCTCAAGTGGACTTCAGAACCGGAGAC
CGACGAACGTCGCCTGCTGCTCATCAAAGTTACTCTGATTTCGACCTTTTTGATTGGCATTTCCTACTACATCAAGCGTT
TTAAGTGGTCAACGCTCAAGTCTCGCAAGATCTTCTTCATTCCCGAACTGGAGGCCCAGGCCAAAAGAGAGGCGGAGGAG
GCCGCCAAAGCAGCGCGCAAGGCCAAGGAGCAGGAGTGCAACAAGTGCGAGAACCAGAACGAGAAGAAGGACTAA

Alignment

ORF - retro_dmel_62 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.55 %
• Parental protein coverage: 89.25 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GSWASGNKKLIGALGAITGGVGALIYALEQSVQASGGEVHSPAQLWNHKGLFDALDHQSVRRGYEVYKQV
          GS...GN.KL.GALGA.TG..G.LIYALE.SV.AS...VH...Q.WNHKGL..ALD..SVRRGY.VYK.V
Retrocopy GSGFTGNRKLLGALGALTGTAGLLIYALETSVDASSDCVHPAHQHWNHKGLLSALDKESVRRGYTVYKEV

Parental  CSACHSMQYIAYRNLVGVTHTEAEAKAEAEQITVKDGPDDTGNYYTRPGKLSDYFPSPYPNEEAARAANN
          CS.CHS.QY.AYRNLVGV..TEAEAKAEAE.ITV.DGP...G.YY.RPGKLSD.FPSPY.NEEAAR.ANN
Retrocopy CSSCHSLQYMAYRNLVGVCMTEAEAKAEAEAITVRDGPNEEGEYYERPGKLSDHFPSPYANEEAARSANN

Parental  GAYPPDLSYIVSARKGGEDYIFSLLTGYHDAPAGVVLREGQYFNPYFPGGAISMAQVLYNEVIEYED-GT
          G.YPPDLSYIVSARKGGEDY.FSLLTGY.D.PAG..LR.G.YFNPYF.GGAI.M..V..NEV...ED...
Retrocopy GSYPPDLSYIVSARKGGEDYVFSLLTGYCDPPAGFALRDGLYFNPYFSGGAIAMGKVVDNEVVSFEDPNV

Parental  PPTQSQLAKDVATFLKWTSEPEHDDRKQLLIKVIGILGFLTVISYYIKRHKWSSLKSRKIVFVPK
          P....Q.AKDV..FLKWTSEPE.D.R..LLIKV..I..FL..ISYYIKR.KWS.LKSRKI.F.P.
Retrocopy PASAAQIAKDVCVFLKWTSEPETDERRLLLIKVTLISTFLIGISYYIKRFKWSTLKSRKIFFIPE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_62 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_62 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006052	1 retrocopy	retro_amel_1092,
Myotis lucifugus	ENSMLUG00000015182	1 retrocopy	retro_mluc_36,
Drosophila melanogaster	FBgn0035600	1 retrocopy	retro_dmel_62 ,