RetrogeneDB ID: retro_dmel_51

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 2L:19564337..19565006(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0032809
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CG13077
• Ensembl ID: FBgn0032810
• Aliases: None
• Description: None

Sequence

>retro_dmel_51
ATGAGCGATGACAAAACAAAACCAACCTCAGTGCTCCAGCATATAGAATCGGCGCTATATGTGATCAACCAGCTGTGCAT
AGGATTCGTCACCATTTGGATCAGCTGGACCTGCTTGCGCCAGGACCTCTCGGGCATTCGCCTGCATGCCTGGCTGGTTA
CCTTCGGTTTTGTGTTCCTGATGGCCGAGGGAATGATGTGCTTCTACGACGGCAGTTGGCTAACTGTGCGTTACTCCCGG
AATTACAAGACTGCCTTTCACGTGGTCCTTCAGATCCTTGGGGGAGGCATGGGCGTGGCCGGCTGTTTGATTCAACTAAT
ACGTGACGATTGGTCAATCAGCGTCACGTTACATGCCCGCCTGGGTTTCGCCGCCTTCGTCCTGTGTCTGATCTCATTGC
TGAGTGGACTGGTCGCCTTCCTGGCGAGATGCCTGAGCAGGACCATCTCACCCTTGGTCAACAAGACCTTCCATGTGGTC
CTCAGCTTCACCGCCTTCGTGATCGCCATGATGGCGCAGTTTTACGGATACACACAGACTGGAATTTTCAGGGGACAAGG
ACAGGATTTCGTTGTCCTCATGCAGGTCGTCACTATGGTCCTAATGGTCCTAACCAGCATTGGCGCCATTAAGTCGCTCT
ACCAGAAGATTGGTAGCCTGGCCAGTTAG

Alignment

ORF - retro_dmel_51 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.24 %
• Parental protein coverage: 77.7 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LQRLEYFLNVLNQMCIGFITIYISYLTLRTGLSGTGLHAWLVTIGFSFFMAEGVMIHYGGNVLTNGYKRQ
          LQ..E..L.V.NQ.CIGF.TI.IS...LR..LSG..LHAWLVT.GF.F.MAEG.M..Y.G..LT..Y.R.
Retrocopy LQHIESALYVINQLCIGFVTIWISWTCLRQDLSGIRLHAWLVTFGFVFLMAEGMMCFYDGSWLTVRYSRN

Parental  TKTTIHWVLLTLGGGCGAAGALIKMIQKGFLLQST-HGRLGMTAFVLCILAMSSGLAALFSSRIKKLITP
          .KT..H.VL..LGGG.G.AG.LI..I........T.H.RLG..AFVLC.....SGL.A.........I.P
Retrocopy YKTAFHVVLQILGGGMGVAGCLIQLIRDDWSISVTLHARLGFAAFVLCLISLLSGLVAFLARCLSRTISP

Parental  LLNKTFHNFLGFACFVIALVTQYYGY-QTGYFKSRSETDFQILMKCLTLISLVLSSYGPMKALYQKCKNI
          L.NKTFH..L.F..FVIA...Q.YGY.QTG.F......DF..LM...T....VL.S.G..K.LYQK....
Retrocopy LVNKTFHVVLSFTAFVIAMMAQFYGYTQTGIFRGQGQ-DFVVLMQVVTMVLMVLTSIGAIKSLYQKIGSL

Parental  S
          .
Retrocopy A

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_51 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_51 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Drosophila melanogaster	FBgn0032810	1 retrocopy	retro_dmel_51 ,