RetrogeneDB ID: retro_dmel_43

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 3R:5946244..5947096(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0037789
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: gammaSnap
• Ensembl ID: FBgn0028552
• Aliases: None
• Description: gamma-soluble NSF attachment protein [Source:FlyBase gene name;Acc:FBgn0028552]

Sequence

>retro_dmel_43
ATGAGCACTCTTGATGCCAAAAAGATAGAAGAGGCGGAGGCCTTGATAGGACAGACGGATAGTGCCGCGAATGAGTATGC
CAAAGCTGGTATGTATTTCAAGGCAGCAACCGCATATCGAATTGCCAAAAGTTTCGATAAGCGCAAGGATTGTCTTTTGA
AGGCCATCGACTGTTACGAAAACAACAAGTCATGGTTCCATGCAGCCAAATCCTACGAGCAGATTATCCTGCTTGCCAAA
GAAACGGACAAACTGTCCGAAGTGGAGGACTATGCCAATAGGGCTTGCTGTCTCTACCAGCAACATGGTTCGCCGGAAGC
AGCAGCTGCTGCTCTCGATAAAGCCGCCAAAATGACGGAATCCAAGCATCCTGACTTGGCTTTGGGATTTTACAAACGCG
CCCTGGCAGTCGTCTTGATTGGGGACTCCACTCATCAGGCATCGGAATTTGCATCGAAGGTTTCCCGGATATTGGTCAGA
CTCAAAAAATATGAAGAAGCCACGAAAGCCCTCAAAAAGGAAATAAGCCTAAATCTGCAGACAAAGTCTTACGGACAAGT
TGGCCGTTTAGTAGTTGCTTTAATACTGGTACAATTAACACTAGAGGATTACGTGGATGCCAAGAAGACCTTCAAGAAAT
GGGGAAACCGTTGTGATCCCCAGGAGGTGAACACATTACAAAACCTACTCAAAGCTTTTGACGACGAGGATCCTGAGCTG
GCCACCAAGATGCTGGCATCTCCATTCATAAGACACATGGACGTGGAGTACGCACTTTTATCTAAAGATGTGCCATTACC
AAAAGGAAATCGTCAAATGACCAAAAATGCAGTCGACAATGCCGCAAACTAA

Alignment

ORF - retro_dmel_43 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.83 %
• Parental protein coverage: 83.77 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ADEYSKAATAYRIAKSYDKSKECFLKAIDAYKNNKSWFHAAKAYEQIILLSKDADKLHEVEEYANKSASL
          A..Y.KAATAYRIAKS.DK.K.C.LKAID.Y.NNKSWFHAAK.YEQIILL.K..DKL.EVE.YAN....L
Retrocopy AGMYFKAATAYRIAKSFDKRKDCLLKAIDCYENNKSWFHAAKSYEQIILLAKETDKLSEVEDYANRACCL

Parental  YQQHGSPEAAASALDKAAKLTESKHPDMALRFYQHALEVIMIEDSVRQAAEYASKVSRILVKLRRYDEAT
          YQQHGSPEAAA.ALDKAAK.TESKHPD.AL.FY..AL.V..I.DS..QA.E.ASKVSRILV.L..Y.EAT
Retrocopy YQQHGSPEAAAAALDKAAKMTESKHPDLALGFYKRALAVVLIGDSTHQASEFASKVSRILVRLKKYEEAT

Parental  NALKKEISLNQQTESYGQIGRLVVALVMVQLARGDSVEAEKTFREWGNCCEPEEVSTLQTLLQAFDDEDP
          .ALKKEISLN.QT.SYGQ.GRLVVAL..VQL...D.V.A.KTF..WGN.C.P.EV.TLQ.LL.AFDDEDP
Retrocopy KALKKEISLNLQTKSYGQVGRLVVALILVQLTLEDYVDAKKTFKKWGNRCDPQEVNTLQNLLKAFDDEDP

Parental  ELAARMLASPFIRHMDVEYAILSKNIPLPQG-IQMEKKAGDTAA
          ELA..MLASPFIRHMDVEYA.LSK..PLP.G..QM.K.A.D.AA
Retrocopy ELATKMLASPFIRHMDVEYALLSKDVPLPKGNRQMTKNAVDNAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_43 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_43 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Drosophila melanogaster	FBgn0028552	1 retrocopy	retro_dmel_43 ,