RetrogeneDB ID: retro_dmel_41

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 3L:17542936..17543749(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0036738
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CG10472
• Ensembl ID: FBgn0035670
• Aliases: None
• Description: None

Sequence

>retro_dmel_41
ATGATGAAACTTTTGGTTTGCGTCCTGCTGGTAGGATCCTGTACGGCTGTTCCCCTCCTTACCGATGTGGAACCCTATAT
TACGAATGGAGAACCGGCGGAGGTGGGTCAGTTTCCCTACCAGGCCGGTCTGAACGTCTCCTTCGGGAACTGGAGCACTT
GGTGCGGCGGCACCTTGATCTCACACTACTGGATAATCACAGCAGCACACTGCATGGATGGGGCGGAGTCCGTAACGGTC
TATTTGGGGGCCATAAACATCGGTGATGAGTCCGAGGAGGGTCAAGAAAGGATCATGGTGGAGAAGTCGGGTATTATAGT
GCACTCGAACTATATGGCCAGCACGGTGGTCAACGACATCTCGCTTATTCGATTGCCCGCCTTTGTGGGTTTCACTGATC
GCATCCGGGCCGCCAGTTTGCCCCGTCGCTTGAATGGCCAGTTTCCCACGTACGAGTCCATCCGGGCCTTCGCCTCCGGC
TGGGGGCGGGAAAGCGATGCCTCCGACTCGGTTTCCCCCGTGCTGAGATACGTGGAGATGCCCATTATGCCTCACTCCCT
GTGCCGGATGTACTGGAGTGGAGCTGTGTCGGAGAAGATGATCTGCATGAGCACCACCAGCGGCAAGTCCACCTGCCATG
GTGACTCTGGCGGTCCGCTGGTCTACAAGCAGGGCAACTCCAGCTACCTGATCGGATCCACCTCTTTTGGAACCTCTATG
GGATGTCAAGTGGGATTCCCGGCCGTGTTCACCCGCATCAGCAGCTACTTGGACTGGATCCTTAACCATATCATCGCCCA
TAATAAAGAATAA

Alignment

ORF - retro_dmel_41 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.21 %
• Parental protein coverage: 80.34 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ITGGQIAEPNQFPYQVGLLLYITGGAAWCGGTIISDRWIITAAHCTDSLTTGVDVYLGAHDRTNAKEEGQ
          IT.G..AE..QFPYQ.GL.........WCGGT.IS..WIITAAHC.D.....V.VYLGA.......EEGQ
Retrocopy ITNGEPAEVGQFPYQAGLNVSFGNWSTWCGGTLISHYWIITAAHCMDG-AESVTVYLGAINIGDESEEGQ

Parental  QIIFVETKNVIVHEDWIAETITNDISLIKLPVPIEFNKYIQPAKLPVK-SDSYSTYGGENAIASGWGKIS
          ..I.VE....IVH....A.T..NDISLI.LP....F...I..A.LP........TY....A.ASGWG..S
Retrocopy ERIMVEKSGIIVHSNYMASTVVNDISLIRLPAFVGFTDRIRAASLPRRLNGQFPTYESIRAFASGWGRES

Parental  DSATGATDILQYATVPIMNNSGCSPWYFGLVAASNICIKTTGGISTCNGDSGGPLVLDDG-SNTLIGATS
          D........L.Y...PIM..S.C.....G.V....IC..TT.G.STC.GDSGGPLV...G.S..LIG.TS
Retrocopy DASDSVSPVLRYVEMPIMPHSLCRMYWSGAVSEKMICMSTTSGKSTCHGDSGGPLVYKQGNSSYLIGSTS

Parental  FGIALGCEVGWPGVFTRITYYLDWI
          FG...GC.VG.P.VFTRI..YLDWI
Retrocopy FGTSMGCQVGFPAVFTRISSYLDWI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

1 EST(s) were mapped to retro_dmel_41 retrocopy

EST ID	Start	End	Identity	Match	Mis-match	Score
EV586359	17543353	17543466	100	113	0	113

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_41 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Drosophila melanogaster	FBgn0035670	1 retrocopy	retro_dmel_41 ,