RetrogeneDB ID: | retro_crei_8 | ||
Retrocopylocation | Organism: | Chlamydomonas reinhardtii | |
| Coordinates: | DS496141:1075460..1075691(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | CHLREDRAFT_172427 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_crei_8
GTGGCGTTCCGCCGGCACGGGCCGCGGCGGCTGTCGGTCAGGTGTGTGATGGGTCTGCGCAAGGCGCTGGACAGCTACCT
CAGCGGCGTGCAGGCAGCGCAGTGGGCGGCGGCGCGGGACCGCAAGGAGACTGTGGGCGCAGCCTGCAGGGCAGACGAGC
AGGTGTGTTGGAGGCCGCGGCCCCTTCGTACGTTTGGCCGCCTTAGGAAGGCTGCGGGAGCATTGATGTAC
GTGGCGTTCCGCCGGCACGGGCCGCGGCGGCTGTCGGTCAGGTGTGTGATGGGTCTGCGCAAGGCGCTGGACAGCTACCT
CAGCGGCGTGCAGGCAGCGCAGTGGGCGGCGGCGCGGGACCGCAAGGAGACTGTGGGCGCAGCCTGCAGGGCAGACGAGC
AGGTGTGTTGGAGGCCGCGGCCCCTTCGTACGTTTGGCCGCCTTAGGAAGGCTGCGGGAGCATTGATGTAC
ORF - retro_crei_8 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 55.84 % |
| Parental protein coverage: | 66.96 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VAFRRHGPQRQWTKYLTGLRQSLDTYLTGAQAAQWAAARDRKEAVGAAFKADEQ--YRDRRPLTSDQIDY |
| VAFRRHGP.R.......GLR..LD.YL.G.QAAQWAAARDRKE.VGAA..ADEQ...R.R...T...... | |
| Retrocopy | VAFRRHGPRRLSVRCVMGLRKALDSYLSGVQAAQWAAARDRKETVGAACRADEQVCWRPRPLRTFGRLRK |
| Parental | ASGDVVH |
| A.G.... | |
| Retrocopy | AAGALMY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Chlamydomonas reinhardtii was not studied using RNA-Seq expression data.
Chlamydomonas reinhardtii was not studied using ChIP-Seq data.
Chlamydomonas reinhardtii was not studied using EST data.
Chlamydomonas reinhardtii was not studied using FANTOM5 data.
retro_crei_8 was not experimentally validated.
Retrocopy orthology:
Chlamydomonas reinhardtii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Chlamydomonas reinhardtii | CHLREDRAFT_172427 | 1 retrocopy |
retro_crei_8 ,
|