RetrogeneDB ID: retro_crei_2

Retrocopy location

• Organism: Chlamydomonas reinhardtii
• Coordinates: DS496128:4273..4711(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: CHLREDRAFT_103408
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: CHLREDRAFT_121846
• Aliases: None
• Description: None

Sequence

>retro_crei_2
ATGCGGTGCGCCCAGCCTACGCCTCAAGAACCACCGTGCGCGCGCCCTTTCCCGCGGCTGGTGTCAAGCCCGCAGGTAAC
GGCGTGCCGGCACATGCGGTGCGCCCAGCCTACGCCTCAAGAACCACCGTGCGCGCGCCCTTTCCCGCGGCTGGTGTCAA
GCCCGCAGGTAACGGCGTGCCGGCACATGCGGTGCGCCCAGCCTACGCCTCAAGAACCACCGTGCGCGCGCCCTTTCCCG
CGGCTGGTGTCAAGCCCGCAGGTAACGGCGTGCCGGCACATGCGATGCGCCCCGCCTACGCCTCAAGAACCACCGTGCGC
GCGCCCTTTCCCGCGGCTGGTGTCAAGCCCGCAGGTAACGGCGTGCCGGCACATGCGGTGCGCCCAGCCTACGCCTCAAG
AACCACCGTGCGCGCGCCCTTTCCCGCGGCTGGTGTCA

Alignment

ORF - retro_crei_2 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.15 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PQGPPCSRPFPRLVSSPQVPAGGDALCAWPTPQGPLCSRPFPRLVSSPQVPAGGDALCAWPTPQGPLCSR
          PQ.PPC.RPFPRLVSSPQV.A.....CA.PTPQ.P.C.RPFPRLVSSPQV.A.....CA.PTPQ.P.C.R
Retrocopy PQEPPCARPFPRLVSSPQVTACRHMRCAQPTPQEPPCARPFPRLVSSPQVTACRHMRCAQPTPQEPPCAR

Parental  PFPRLVSSP
          PFPRLVSSP
Retrocopy PFPRLVSSP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Chlamydomonas reinhardtii was not studied using RNA-Seq expression data.

ChIP-Seq

Chlamydomonas reinhardtii was not studied using ChIP-Seq data.

EST

Chlamydomonas reinhardtii was not studied using EST data.

TSS

Chlamydomonas reinhardtii was not studied using FANTOM5 data.

Lab

retro_crei_2 was not experimentally validated.

Homology

Retrocopy orthology:

Chlamydomonas reinhardtii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Chlamydomonas reinhardtii	CHLREDRAFT_121846	1 retrocopy	retro_crei_2 ,