RetrogeneDB ID:

retro_chof_957

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_175596:3731..4141(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2W
Ensembl ID:ENSCHOG00000005910
Aliases:None
Description:ubiquitin-conjugating enzyme E2W (putative) [Source:HGNC Symbol;Acc:25616]


Retrocopy-Parental alignment summary:






>retro_chof_957
CAACTACAGAAAGAACTGTTGGCTTTGCAAAATGACTCACCTCCTGGGGTGACTTTAAATGAAAAGAGTGTTCAAAATTC
AATTACACAGTGGATCATAGATACGGAAGGTGTACCAGGTACCTTATATGAAGGGGAAATTTTTCAGCTTCTATTTAAGG
TTAGTAGTTGATATGCTTTTGACTCTCCTCAGGTCACGTTTACCAGTGAAAATATTCCTGTTCATCCTCATGTTTATAGC
AATGTCATATCTGTTTATCCATTCTAACAGAAGACTGGTCCCCAGCACTCTCAGTCCAATCAGTTTGTCTTAGCATTATT
AGCATGCTTTCCAGCTGCAAAGAAAAGAGACAACCACCAGATAATTCTTTTTATGTTTGAACATGTAACAAGAATCCAAA
GAAAACAAAA

ORF - retro_chof_957 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.26 %
Parental protein coverage: 99.26 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKFQKELLVFQNEQFLAVALNEKSVQNSIA-WIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE
..QKELL..QN.....V.LNEKSVQNSI..WI.D.EG.PGTLYEGE.FQLLFK.SS.Y.FDSPQV.FT.E
RetrocopyQLQKELLALQNDSPPGVTLNEKSVQNSITQWIIDTEGVPGTLYEGEIFQLLFKVSS*YAFDSPQVTFTSE
ParentalNIPVHPHVYSN-GHICLSLLTEDWSPALSVQSV-LTIIRWLSSCKEKRRPPDNSFYVRTCNKNPKKTK
NIPVHPHVYSN..HICLS.LTEDWSPALSVQSV.L.II..LSSCKEKR.PPDNSFYV.TCNKNPKKTK
RetrocopyNIPVHPHVYSN<CHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRQPPDNSFYV*TCNKNPKKTK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Choloepus hoffmanni was not studied using RNA-Seq expression data.