RetrogeneDB ID: retro_chof_810

Retrocopy location

• Organism: Sloth (Choloepus hoffmanni)
• Coordinates: scaffold_150863:1175..1580(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSCHOG00000007605
• Aliases: None
• Description: None

Sequence

>retro_chof_810
AGGGTGGTAAGAAGCTGCCAGTGGTGCAATAGAGAACTTAAAACGATGCAAGAGTGGAAAGTGAAGAGGAGGAGTTCTAA
ATCTTTTAGTGTCCACCTTATGCAGGGTGTTAATGCAGGAAAAAAAAAAAGAGCCATTCCAATTAGTAAAAACAGAGGGC
TTTCAAACCCTGCAGTGCAGCCAGCTTCACAGCGTCCAAAGTTACAAGGAGTGATGAAAGAGAAGAGTGGGCAGAAATGA
AAATGTGCTCGGTCACTCCTCTTGAAGCATACCTTTCTCTCCGATGTCTCCCATGTCCCGGAGATGGAGAGAGGGCTCCC
GAGACTTTTGAGTGATTTCCACTCTGGAGAACTGCAAGCATTTGGAAATGAATGTGCTATTGAACAGATGGAACATGTTC
GGGGA

Alignment

ORF - retro_chof_810 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.59 %
• Parental protein coverage: 57.87 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QVLRSWQRCNKELKTMEERKMKRRSPKSFNAHSTQGVNAKKN--AIPVSKSTGFSNPAAQATSQRPKLKR
          .V.RS.Q.CN.ELKTM.E.K.KRRS.KSF..H..QGVNA.....AIP.SK..G.SNPA.Q..SQRPKL..
Retrocopy RVVRSCQWCNRELKTMQEWKVKRRSSKSFSVHLMQGVNAXXXXXAIPISKNRGLSNPAVQPASQRPKLQG

Parental  VMKEKSRPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGIECAIVHLAHVWG
          VMKEKS...G...K.A.S....H.FL.DVS.V.EMERGL..LL.DFHSG.LQAFG.ECAI....HV.G
Retrocopy VMKEKS---GQK*KCARSLLLKHTFLSDVSHVPEMERGLPRLLSDFHSGELQAFGNECAIEQMEHVRG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST

Choloepus hoffmanni was not studied using EST data.

TSS

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab

retro_chof_810 was not experimentally validated.

Homology

Retrocopy orthology:

Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000007605	1 retrocopy	retro_chof_810 ,
Mustela putorius furo	ENSMPUG00000014889	1 retrocopy	retro_mputfur_1437,
Sorex araneus	ENSSARG00000002666	1 retrocopy	retro_sara_117,