RetrogeneDB ID: retro_chof_57

Retrocopy location

• Organism: Sloth (Choloepus hoffmanni)
• Coordinates: scaffold_76403:4497..5001(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSCHOG00000013871
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSCHOG00000007465
• Aliases: None
• Description: None

Sequence

>retro_chof_57
CACGAGCTTATCCTCTGGATTCAGCAGAATCTCAGACACATCCTCAACCAACCAGAAACAGCAAGTGGCAATGAAAAGTG
CACTTTCCCAACAAGCACAATTGTGGAAGATGGATTGTGGATAACTCTTTTGCATTTAGACCACATGCGAGCAAAGACTA
AATATATCAAGACTGTGGAGAAGTGGGCTTCAGATTTAAGGCTGACAGGAAGACTGATGTTCATGGGTAAAATAATACTG
ATTTTACTACAAGGAGACAGAAACAACATCAAGGAATACCTGATTCTCCAGAAAACCTCCAAAGTAGATGTGGACTCAAG
TGGAAAGAAATGCAGAGAGAAAATGATTAGTGTACTGTTTGAAACAAAAGTACAGACAGAACACAAAAGGTTTCTGGCAT
TTGAAGTCAAAGAGTATTCATCACTGGATGAGTTACAAAAGGAATTCGAATCTGCAGGACTTAAGAAGATTTTCTCTGAA
TTTGTTCTTGGGCTGGTAAAATAA

Alignment

ORF - retro_chof_57 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.92 %
• Parental protein coverage: 53.93 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NEKCTFPTSTIVEDGLWITLLHLYHLRAKTKYIKTVEKWASDLRLTGRLMFMGKIILILLHGDRNNIKEY
          NEKCTFPTSTIVEDGLWITLLHL.H.RAKTKYIKTVEKWASDLRLTGRLMFMGKIILILL.GDRNNIKEY
Retrocopy NEKCTFPTSTIVEDGLWITLLHLDHMRAKTKYIKTVEKWASDLRLTGRLMFMGKIILILLQGDRNNIKEY

Parental  LILQKTSKVDVDSSGKKCREKMISVLFETKVQTEHKRFLAFEVKEYSSLDELQKEFESAGLKKIFSEFVL
          LILQKTSKVDVDSSGKKCREKMISVLFETKVQTEHKRFLAFEVKEYSSLDELQKEFESAGLKKIFSEFVL
Retrocopy LILQKTSKVDVDSSGKKCREKMISVLFETKVQTEHKRFLAFEVKEYSSLDELQKEFESAGLKKIFSEFVL

Parental  GLVK
          GLVK
Retrocopy GLVK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST

Choloepus hoffmanni was not studied using EST data.

TSS

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab

retro_chof_57 was not experimentally validated.

Homology

Retrocopy orthology:

Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000007465	1 retrocopy	retro_chof_57 ,