RetrogeneDB ID:

retro_chof_275

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_6067:28466..29064(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SEPT2
Ensembl ID:ENSCHOG00000008715
Aliases:None
Description:septin 2 [Source:HGNC Symbol;Acc:7729]


Retrocopy-Parental alignment summary:






>retro_chof_275
AAGCCCTTGGACATGGACTCATGAAGGCAATCCACAAAAAGGTCAACATCGTGCCTGTTGTCACCAAGGCCAACATGCTG
ACTCTGAAGGAGCAGGAGCAGCTGAAGAGGAAGATTCTGGATGAAACTGAAGAACATAGCATCAAAATCTATGACTTACC
TGATGCAGTATCAGATGAAGAGGATTTTAAAGAGCAGATGAGAGTTCTAAAGGTGAGCATTCCATTTTCTGTGGTTGGAT
CCAATCAGCTGATTGAAGCCAAAGGCAAGAAGATCAGAGACCATCTCTATCCATGGGGCATTGTGGAGGTGGAGAATCCT
GAGCACAACAACTTCCTGAGCTGAAGACAATGCTCATCACCCACATGCAGGACCTACAGGAGGTGACCAAGGACCTGCAC
TATGAGAACTTCCATTCAAAGCATCTAAAGAGGGATGGGAGGAAAGTAGAGAATGAGGATATGAACAAAGACCAGATCTA
GCTGGAAAAGGAAGCTGAACTTCATTGCATGCAAGAGATGATTGTAAGAATGCAGGCACTGGTGCAGATGCAGATGCAGG
GGGAAGATGGTGATGGCAGCACTTATGGGTCCCACATG

ORF - retro_chof_275 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.83 %
Parental protein coverage: 53.93 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalKPLDV-AFMKAIHNKVNIVPVIAKADTLTLKERERLKRRILDEIEEHSIKIYHLPDAESDEDEDFKEQTR
KPLD....MKAIH.KVNIVPV..KA..LTLKE.E.LKR.ILDE.EEHSIKIY.LPDA.SDE.EDFKEQ.R
RetrocopyKPLDM<GLMKAIHKKVNIVPVVTKANMLTLKEQEQLKRKILDETEEHSIKIYDLPDAVSDE-EDFKEQMR
ParentalLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFL-KLRTMLITHMQ-LQEVTQDLHYEN
.LK.SIPFSVVGSNQLIEAKGKK.R..LYPWG.VEVENPEHN.FL..L.TMLITHMQ.LQEVT.DLHYEN
RetrocopyVLKVSIPFSVVGSNQLIEAKGKKIRDHLYPWGIVEVENPEHNNFL<ELKTMLITHMQDLQEVTKDLHYEN
ParentalFRSERLK-GGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGSAHGPHV
F.S..LK..GRKVENEDMNKDQI.LEKEAEL..MQEMI.RMQA..QMQMQG.DGDGS..G.H.
RetrocopyFHSKHLKRDGRKVENEDMNKDQI*LEKEAELHCMQEMIVRMQALVQMQMQGEDGDGSTYGSHM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide