RetrogeneDB ID: retro_chof_2585

Retrocopy location

• Organism: Sloth (Choloepus hoffmanni)
• Coordinates: scaffold_88025:305..598(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNF11
• Ensembl ID: ENSCHOG00000000508
• Aliases: None
• Description: ring finger protein 11 [Source:HGNC Symbol;Acc:10056]

Sequence

>retro_chof_2585
AGCCTGTCTGACCCAGCTAACTTTGGCAAAGGGATGGAACCAGATTAGGAGCTGCCGCTGCCATATCAGGAATAAGTTCC
ATTTCCAGTCTATCATCCAACACCTGGGCAGACTCAACTTGCAACACAGTTGACTGAAGAGGAAGAAATTAGGACAGCTC
AAATAATAGGCCTTATACAGCATGTGCCTAAAGTAGTTTTTGACCCCAGAATAAACGAATCAAGAAAATCAGATGCATGC
ACATCTGCCACTTGGACCATAAAGATGCCTAGTTGATGAGATCCCTCACTTGC

Alignment

ORF - retro_chof_2585 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60. %
• Parental protein coverage: 68.06 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SQSDKTSFGKGMEVDQEL-LPYXEQVPVPVYHPTPSQTRLATQLTEEEQIRIAQRIGLIQHLPKGVYDPG
          S.SD...FGKGME.D.EL.LPY.E.VP.PVYHPTP.QT.LATQLTEEE.IR.AQ.IGLIQH.PK.V.DP.
Retrocopy SLSDPANFGKGMEPD*ELPLPYQE*VPFPVYHPTPGQTQLATQLTEEEEIRTAQIIGLIQHVPKVVFDP-

Parental  RDGSEKKIRECV-ICMMDFVYGDPIRFLPC
          R.....K...C..IC..D.......R.L.C
Retrocopy RINESRKSDACT<ICHLDHKDA*LMRSLTC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST

Choloepus hoffmanni was not studied using EST data.

TSS

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab

retro_chof_2585 was not experimentally validated.

Homology

Retrocopy orthology:

Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000508	1 retrocopy	retro_chof_2585 ,
Myotis lucifugus	ENSMLUG00000004439	1 retrocopy	retro_mluc_145,