RetrogeneDB ID:

retro_chof_2538

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_83537:7524..8104(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MAK16
Ensembl ID:ENSCHOG00000009081
Aliases:None
Description:MAK16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:13703]


Retrocopy-Parental alignment summary:






>retro_chof_2538
CATAAATGTAAACAGAGATTCACCAGGATTACCCGGTAGCTAATTTGAATTCGAAAACTTACGCTAAAGAGACAGAGAAA
ACTTGTTCCTTTGAGTAAGAAGGTAGAACAGAGGGAAAAAAGGAGCGAGGAAAAGGCATTGATAGCTGCTCAGCTGGACA
ACAACATTGAAAAGGAATTACTAGAAAGACTGAAACAAGATACATATGGCGACATCTACAACTTCCCTGTTCATGCGTTC
GACAAGGCCCTGGAACAGCAGGAGGCAGAGAGTGGCTCTTCAGATGCTGAGGAAAAAGACAACAATGAAGAAGAAGAAGA
AGATGTGGGAACAAGAGAATTTGTGGAAGATGATGAGGTGGATGAGAGTGACATAAGTGACTTTGAGGACATGAATAAAT
TGGATATCAGCAGTAATGAAGATCAGGATCAGAGATCATCCAGTGAGGACGAAGAAAAGGCCCTGGATGCCAGACACAAA
AGCAAAAACACCTTTGAAAGGACCTTTGCGGAGAAAATGAGCCTATGTAGAGATAGGGTATGAGCAGGAGACAGAGCCCA
TGGCTAAGGCCAAAACCACG

ORF - retro_chof_2538 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.05 %
Parental protein coverage: 64.19 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalHKCKQRFTKITQYLIRIRKLTLKRQRKIVPLSKKVERREKRREEKALIAAQLDNAIEKELLERLKQDTYS
HKCKQRFT.IT..LI.IRKLTLKRQRK.VPLSKKVE.REKR.EEKALIAAQLDN.IEKELLERLKQDTY.
RetrocopyHKCKQRFTRITR*LI*IRKLTLKRQRKLVPLSKKVEQREKRSEEKALIAAQLDNNIEKELLERLKQDTYG
ParentalDIYNFPIHAFDKALEQQEAESDSSDAEEKDDEEEEVDE--TREFLEDDEVDESDIK-LEDMDKLDISGSE
DIYNFP.HAFDKALEQQEAES.SSDAEEKD..EEE.....TREF.EDDEVDESDI...EDM.KLDIS..E
RetrocopyDIYNFPVHAFDKALEQQEAESGSSDAEEKDNNEEEEEDVGTREFVEDDEVDESDISDFEDMNKLDISSNE
ParentalDQDQRSSSEDEEKALDARH-KGKTPLKGPLRRKRAYVEIEYEQETEPMAKAKTT
DQDQRSSSEDEEKALDARH.K.KTPLKGPLRRK.AYVEI.YEQETEPMAKAKTT
RetrocopyDQDQRSSSEDEEKALDARH>KAKTPLKGPLRRK*AYVEIGYEQETEPMAKAKTT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide