RetrogeneDB ID:

retro_chof_2503

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_81050:106..517(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HRSP12
Ensembl ID:ENSCHOG00000001278
Aliases:None
Description:heat-responsive protein 12 [Source:HGNC Symbol;Acc:16897]


Retrocopy-Parental alignment summary:






>retro_chof_2503
ATGTCGTCCTTGATCCGAAAGGTGATTAGCACCGCGAAAGCCCCAGGGGCCATTGGTCCTTACAGTCAAGCCATGCTGGT
CGACAGGACCATTTATATTTCAGGACAGCTAGGCATGGACCCTTCAAGTGGACAGCTTGTGCCAGGCGGGGTGACAGAAG
AAGCTAACCAAGCTCTTAAAAACATGGGTGAAATTCTGAAAGCTGCAGGCTGTGACTTTGCTAACGTTGTAAAAACAACT
GTCTTGCTGGCTGACATAAATGATTTCAATGCTGTCAATGAAGTCTACAAACAGTATTTCAAGAATAATTTTCCTGCTAG
AGCTGCTTACCAAGTTGCTGCTCTGCCCAAAGGGGGCCGTGTTGAGATTGAAGCAATAGCCGTCCAAGGACCTCTCACGA
CAGCTAGTCTG

ORF - retro_chof_2503 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.54 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSSLIRKVISTAKAPGAIGPYSQAMLVDRTIYISGQLGMDPSSGQLVPGGVTEEANQALKNMGEILKAAG
MSSLIRKVISTAKAPGAIGPYSQAMLVDRTIYISGQLGMDPSSGQLVPGGVTEEANQALKNMGEILKAAG
RetrocopyMSSLIRKVISTAKAPGAIGPYSQAMLVDRTIYISGQLGMDPSSGQLVPGGVTEEANQALKNMGEILKAAG
ParentalCDFANVVKTTVLLADINDFNAVNEVYKQYFKNNFPARAAYQVNNLPKGGRVEIEAIAVQGPLTTASL
CDFANVVKTTVLLADINDFNAVNEVYKQYFKNNFPARAAYQV..LPKGGRVEIEAIAVQGPLTTASL
RetrocopyCDFANVVKTTVLLADINDFNAVNEVYKQYFKNNFPARAAYQVAALPKGGRVEIEAIAVQGPLTTASL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Choloepus hoffmanni was not studied using RNA-Seq expression data.