RetrogeneDB ID:

retro_chof_2452

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_77132:4268..4831(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:KRR1
Ensembl ID:ENSCHOG00000009636
Aliases:None
Description:KRR1, small subunit (SSU) processome component, homolog (yeast) [Source:HGNC Symbol;Acc:5176]


Retrocopy-Parental alignment summary:






>retro_chof_2452
GAATCACAACTTCTTGCTGTTCCTGATGGTTAGAAGAAAATAGTCTTTTCCAAAGAGGGTAATCCTAAAGGGATCTTGGA
GGAGAGTAGCTTTGCAACTTTGTTTCCAAAATATAGGGAGGCTTACTTGAAAGAATGTAAGCCATTGGTGTAGAGAACCT
TGAATGAACATCACATTAATGCAGTCCTGGACCTGATCAAGGGCAGAATGACAGTTTATGCAACAAAGAAGACTTTTGAT
CCATACATCATCCTTAGGTTCAGAGACCTAGTGAAACTTTTAGCAAGGAGTGTTTCATTTGAACAGGCAGTCCAAATTCT
TCAGGATGATGTTGCTTGTGACATCATTAAAATAGGTTCTTTAGCACAAAGTGAAAGGCTTGTAAAAAGACAACTGCTTA
TTGGCCCCAAAGGATCTACACTGAAGGCATTGGAACTCTTAACAAACTTTACATTATGGTTCAGGGAAACGCAGTTTCAG
CCACTGGAACTTTTAGTGGCTTAGAAGATACCTTACTGTTTAAACAAGTGTTGGCAAAGACTATGAAGTAAGATCACAAA
GTT

ORF - retro_chof_2452 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.82 %
Parental protein coverage: 53.12 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalEAELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEGSM
E..LL.VPDG.K...FSKE.NP.G.LEESSFATLFPKYREAYLKEC.PLV...LNEHHINA.LDLI.G.M
RetrocopyESQLLAVPDG*KKIVFSKEGNPKGILEESSFATLFPKYREAYLKECKPLV*RTLNEHHINAVLDLIKGRM
ParentalTVYTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDIACDIIKIGSLVRNKERFVKRRQRLIGPKG
TVY.TKKTFDPYII.R.RDL.KLLARSVSFEQAV.ILQDD.ACDIIKIGSL....ER.VK.RQ.LIGPKG
RetrocopyTVYATKKTFDPYIILRFRDLVKLLARSVSFEQAVQILQDDVACDIIKIGSLAQS-ERLVK-RQLLIGPKG
ParentalSTLKALELLTN-CYIMVQGNTVSAIGPFSGLKEV---RKVVLDTMKNIHPI
STLKALELLTN..YIMVQGN.VSA.G.FSGL........V...TMK..H..
RetrocopySTLKALELLTN<LYIMVQGNAVSATGTFSGLEDTLLFKQVLAKTMK*DHKV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide