RetrogeneDB ID:

retro_chof_2389

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_70803:447..1052(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:AURKA
Ensembl ID:ENSCHOG00000005976
Aliases:None
Description:aurora kinase A [Source:HGNC Symbol;Acc:11393]


Retrocopy-Parental alignment summary:






>retro_chof_2389
CATCCTAATATTCTCAAACTGGATAGTTATTTCCTTGATGCTCAATTAGTTTACCTAATTCTAGAGTACGCACCACTTGG
AGCAGTTTATAGAGAACTTCAGAAGCTTCCAAGTGTGATGAACAAAGAACTGCTATTTATATCGCAGAATTGGCAGATGC
ACTGTCTGACTGTCATTCAAAGAAAGTTATTCACGGAGGCATCAAGCCAGAGAACCTGCTCCTCAAATCAACTGGAAAGC
CTAAGATTGCAGACTTTCAGTGGTCGGTACATGCCCCGTCCTCCAGGAGAACCACTCTCTGTAGAACCCTTGACTGCTTG
CCTCCTGAGGTGGTTGAATGCATGGTACACGAGAAGGAGGATCTCTGGAGCCTTGGAGTTCTTTGCTAAGAATTTTTAGC
TGGGAAACCTCCTTTTGAGGCAAAAAAACCAGGAGACTTGCAACAGAATATCAAGGATTGAATCCACATTCCCTGTCTTT
GTAAAAGAGGGAGCCAGGGACCTCATTCAAGATTGTTGAAGCATAATCCAAGCCAAACGCTAACTCTAAAAGAAGTGCTT
GAACACCCCCAGATCACAGCAAATTCATCAAAACCACCAGGGACC

ORF - retro_chof_2389 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.08 %
Parental protein coverage: 94.86 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalHPNILRLYGYFHDATRVYLILEYAPLGAVYRELQKL-SKFDEQRTATYITELADALSYCHSKKVIHRDIK
HPNIL.L..YF.DA..VYLILEYAPLGAVYRELQKL.SK.DEQRTA.YI.ELADALS.CHSKKVIH..IK
RetrocopyHPNILKLDSYFLDAQLVYLILEYAPLGAVYRELQKL<SKCDEQRTAIYIAELADALSDCHSKKVIHGGIK
ParentalPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPP
PENLLL.S.G..KIADF.WSVHAPSSRRTTLC.TLD.LPPE..E...H.EK.DLWSLGVLC.EFL.GKPP
RetrocopyPENLLLKSTGKPKIADFQWSVHAPSSRRTTLCRTLDCLPPEVVECMVH-EKEDLWSLGVLC*EFLAGKPP
ParentalFEANTYQETYNRISRVEFTPDFVTEGARDLISRLLKHNPSQRPTLKEVLEHPWITANSSKPPSS
FEA.........I......P.....G.....SRLLKHNPSQ..TLKEVLEHP.ITANSSKPP..
RetrocopyFEAKKPGDLQQNIKD*IHIPCLCKRGSQGPHSRLLKHNPSQTLTLKEVLEHPQITANSSKPPGT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide