RetrogeneDB ID:

retro_chof_2181

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_56425:8957..9365(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2G1
Ensembl ID:ENSCHOG00000011801
Aliases:None
Description:ubiquitin-conjugating enzyme E2G 1 [Source:HGNC Symbol;Acc:12482]


Retrocopy-Parental alignment summary:






>retro_chof_2181
GGTGCTGTGAGAAGAGCTGGACCGAACGGACCCGAACAGGCAACGAGGAGCCGCTATCGCGCCCCAGCCCGGCCTTCCTT
GATTTCCGCTCTCCGGTCTTGGGGTCCTGGGTTCCTCAGCACACCCAGCTCCAGTCGCCCCCGGAGCCTCCCTCCAGTCC
TTCGGAAGTCCCTGCGCTAGCCCGGGCCCTTGGCGGGGAGGATGACGGAGCTGCAGTCGGCACTGCTGCTGCGAAGACAG
CTGGCAGAACTCAACAAAAATCCAGTGGAAAGCTTTTCAGCAGGTTTAATAGATGACAATGATCTCTACCGATGGGAAGT
CCTTATTATTGGTCCTCCAGATACTCTTTATGAAGGTGGTGTTTTTAAGGCTCATCTTACTTTCACAAAAGAGGATCCCC
TCCAGCCT

ORF - retro_chof_2181 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.23 %
Parental protein coverage: 57.45 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalGAVRRAGPNGPEPATRSRYR-PS-PAFFDFGASVL-GPGFLSTPSSSRPQSLLPVLRKSRHQPGPLAGRM
GAVRRAGPNGPE.ATRSRYR.P..PAF.DF...VL.GPGFLSTPSSSRP.SL.PVLRKS...PGPLAGRM
RetrocopyGAVRRAGPNGPEQATRSRYRAPA<PAFLDFRSPVL>GPGFLSTPSSSRPRSLPPVLRKSLR*PGPLAGRM
ParentalTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP
TELQSALLLRRQLAELNKNPVE.FSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTF.K..PL.P
RetrocopyTELQSALLLRRQLAELNKNPVESFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFTKEDPLQP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Choloepus hoffmanni was not studied using RNA-Seq expression data.