RetrogeneDB ID:

retro_chof_2022

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_45741:10547..10952(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL32
Ensembl ID:ENSCHOG00000013534
Aliases:None
Description:ribosomal protein L32 [Source:HGNC Symbol;Acc:10336]


Retrocopy-Parental alignment summary:






>retro_chof_2022
ATGGCTGCCTTCAGACCCCTCGTAAAGCCCAAGATCATCAAAAAGAGGACCAAGAAGTTCATCCGGCACCAGTCAGAACG
ATATGTCAAAATTAAGCATAACTGGAGGAAACCCAGAGGCGTTGACAACAGGGTGTGGAGAAGATTCAAGGGCCAGATCT
TGATGCCCAGCATCGGTTACGGGAGCAACAAGAAAATGAAGCACATGCTGCCCAGTGGCTTCTGAAAGTTCCTGGTTCAC
AATGTCAAGGAGATGGAAGTGCTGCTGATGTGCAACAAATACTACTGTGCTGAGATTGCTCACAACGTTTCTTCCAAGAA
CTGCAAAGCCACTGTGGAAAGAGCAGCCCAGCTGGCCATCAGAGTCACCAACCCCAATGCCCGGCTGTGCAGCGAAGAAA
ACAAA

ORF - retro_chof_2022 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.15 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAALRPLIKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML
MAA.RPL.KPKI.KKRTKKFIRHQS.RYVKIK.NWRKPRG.DNRV.RRFKGQILMP.IGYGSNKK.KHML
RetrocopyMAAFRPLVKPKIIKKRTKKFIRHQSERYVKIKHNWRKPRGVDNRVWRRFKGQILMPSIGYGSNKKMKHML
ParentalPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE
PSGF.KFLVHNVKE.EVLLMCNK.YCAEIAHNVSSKN.KA.VERAAQLAIRVTNPNARL.SEEN.
RetrocopyPSGF*KFLVHNVKEMEVLLMCNKYYCAEIAHNVSSKNCKATVERAAQLAIRVTNPNARLCSEENK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Choloepus hoffmanni was not studied using RNA-Seq expression data.