RetrogeneDB ID:

retro_chof_2021

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_4572:3585..3973(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSCHOG00000007752
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_chof_2021
ATGTCAGCCGCCGGCGTCCGGGTCCTGTGGGCCACCTACCACTGGTTCCTCAATAAAGAGGAGCTGATGCTGCCTGAGAA
ATTGAGGCCTCTGTACAACCACCCGGCAGGTCCCAAAACAATTTTTTTTTTGGGGGGGGGGCTCCAATTATGAAATGGGG
ATTGGTGTGTGCTGGATTGGCTGACATGGTCAGACTTGCAGAAAAACTAGCACAGCTCAATCTGCTGTTTTGATGACTAC
AGGGTTTATCTGGTCAAGATACTCACTTGTTATTATTCCAAAAAACTGGAGTCTGTTTGCTGTTAATTTTTTTGTGGGAG
CAGCAGGAGCCTCTCAGCTCTTTTGTATTTGTAGATAAAACCAAGAGCTAAAAGCTAAAGCAAACAAA

ORF - retro_chof_2021 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.85 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMSAAGVRGLRATYHRFLDKVELMLPEKLRPLYNHPAGPKTV-FFWA---PIMKWGLVCAGLADMARPAEK
MSAAGVR.L.ATYH.FL.K.ELMLPEKLRPLYNHPAGPKT..FF.....PIMKWGLVCAGLADM.R.AEK
RetrocopyMSAAGVRVLWATYHWFLNKEELMLPEKLRPLYNHPAGPKTI<FFFXXXXPIMKWGLVCAGLADMVRLAEK
ParentalL-STAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGTSQLFRIWRYNQELKAKANK
L.STAQSAVLM.TGFIWSRYSLVIIPKNWSLFAVNFFVGAAG.SQLF.I.R.NQELKAKANK
RetrocopyL<STAQSAVLMTTGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFCICR*NQELKAKANK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Choloepus hoffmanni was not studied using RNA-Seq expression data.