RetrogeneDB ID:

retro_chof_202

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_4429:21131..21632(+)
Located in intron of:ENSCHOG00000005703
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:VSTM5
Ensembl ID:ENSCHOG00000010429
Aliases:None
Description:V-set and transmembrane domain containing 5 [Source:HGNC Symbol;Acc:34443]


Retrocopy-Parental alignment summary:






>retro_chof_202
CAGGGAGCATCACTGTACACTCCCCAGTCCATCATCAACGCTACAGTGGAAGAAGACATTCTGCTCTTGAATACTCCTCC
CATGGGGTGCCCACCATCGAATGGAAGTATACATCCAACTTGGGGTGTGCAGAAGATTGCGGAGTGGAAACCAGGGACTC
AGGCCAACATCTCACAAAGCCACAAGGACAGAATCTGCACCTTCAACAATGGCTCCATTCAGCTTTTCAGTGTGGGTGTG
AGAGATTCTGGCTACTATGTCATCACAGTGACTGAGCGCCTGGGGAGCAGTCAGTTTGGCACCATCGTGCTGCATGTATC
TGAGATCCTCTGTGAAGACCTCCACTTTGTCGCTGTCTTCCTTGCTTTGCTCACTGCTATGGCTGTTTGTTGATCAGCCC
CATGTGGGAGTGCAATGAGTGTGTATATGAAGTCCAGAGGAAGAGAAGACACACTCAAAGAAAGTACAACTGAGGAGACT
GAGCTGTCAGATGTTAAGTGT

ORF - retro_chof_202 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.77 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalQGVSLYIPQSIINATVEEDILL-SVEYSCHGVPTIEWKYTSN-WGVQKIVEWKPGTQANISQSHKDRICT
QG.SLY.PQSIINATV.E...L...EYS.HGVPTIEWKYTSN.WGVQKI.EWKPGTQANISQSHKDRICT
RetrocopyQGASLYTPQSIINATV-EEDIL<ALEYSSHGVPTIEWKYTSN>WGVQKIAEWKPGTQANISQSHKDRICT
ParentalFDNGSIQLFSVGVRDSGYYVITVTEHLGSSQFGTIVLHVSEILYEDLHFVAVFLALLAAVA-AVLISLMW
F.NGSIQLFSVGVRDSGYYVITVTE.LGSSQFGTIVLHVSEIL.EDLHFVAVFLALL.A.A...LIS.MW
RetrocopyFNNGSIQLFSVGVRDSGYYVITVTERLGSSQFGTIVLHVSEILCEDLHFVAVFLALLTAMA<CLLISPMW
ParentalVCNKCVYKVQRKRRHKLKE-STTEEIELQDVEC
.CN.CVY.VQRKRRH......T.E..EL.DV.C
RetrocopyECNECVYEVQRKRRHTQRK>TTEE-TELSDVKC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide