RetrogeneDB ID:

retro_chof_199

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_437:100388..100948(+)
Located in intron of:ENSCHOG00000004445
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS3
Ensembl ID:ENSCHOG00000005328
Aliases:None
Description:ribosomal protein S3 [Source:HGNC Symbol;Acc:10420]


Retrocopy-Parental alignment summary:






>retro_chof_199
GCTGGAGTCGAGGTTTGAGTTACACCAATGAGGACAGAGATCCTTTTCTGGCCACCAGGATGCAGAATGTTCTTGGTGAG
CAAGTCTGGCAGATCCAGGAATTGACTGCTGAAGTTCAGAAGAGGTTGGCTTCCCCAAGGGCAGTGTAGAGATTTATGCT
GAAAAGGTGACCACAAGAGCTCTCCGTGCCATTGCCCAGGCAGATCCTCTGCTTTACAAACCCCTAGGAGGGCTTGCTGG
GTGGAGGGCCTGCTGTGGAATGCTGCATTTCATCATGGAGAGTGGGGCCAAGGGCTGTGAGGTTGTGCTATCTGGGAAAC
TCCGAGGACAGAGGCCAAATGATCCACAATGGGGACCCTGTTAATGACCATGTTGATACTGTGTGTGCCATGTGCTGCTC
AGACAGGCACCCCAATGGTAAGTCTGGTCCTAAGAAGCCCCAGCCTGACCATGTGAGCATGATGGAACACAAAGATGAGA
TCCTGCCCACCACTCCCATCTCACAGCAGAAGGGGTGGAAGCCAGAGCCACCTGCCATGCCCTAACCAGTCCCTAATGCA

ORF - retro_chof_199 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.53 %
Parental protein coverage: 84.47 %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalSGVEVRVTPTRTEIII-LATRTQNVLGEKGRRIRELTAVVQKRF-GFPEGSVEXXAEKVATRGLCAIAQA
.GVEV.VTP.RTEI...LATR.QNVLGE....I.ELTA.VQKR..GFP.GSVE..AEKV.TR.L.AIAQA
RetrocopyAGVEV*VTPMRTEILF<LATRMQNVLGEQVWQIQELTAEVQKRL<GFPKGSVEIYAEKVTTRALRAIAQA
ParentalESLRYKLLGGLAVRRACCGMLHFIMESGAKGCEVVLSGKLRGQ-GQMIHNGDPVNDHVDNVCHVLLR-QH
..L.YK.LGGLA..RACCGMLHFIMESGAKGCEVVLSGKLRGQ.GQMIHNGDPVNDHVD.VC.......H
RetrocopyDPLLYKPLGGLAGWRACCGMLHFIMESGAKGCEVVLSGKLRGQ>GQMIHNGDPVNDHVDTVCAMCCSDRH
ParentalPNGKSGPKKPQPDHVSMMEHKDEILPTTPISQQKGWKPEPPAMP-PVPNA
PNGKSGPKKPQPDHVSMMEHKDEILPTTPISQQKGWKPEPPAMP.PVPNA
RetrocopyPNGKSGPKKPQPDHVSMMEHKDEILPTTPISQQKGWKPEPPAMP*PVPNA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide