RetrogeneDB ID:

retro_chof_1693

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_35944:497..1016(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TIMM17A
Ensembl ID:ENSCHOG00000007440
Aliases:None
Description:translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:HGNC Symbol;Acc:17315]


Retrocopy-Parental alignment summary:






>retro_chof_1693
ATGGAGGAGTATGTACAGGAGCCTGGTTCTTACCCCTGGTGAATGGTTGAGGACTGTGGTGGAGTCTTTACAATGGGTAC
CCTAGGTGGTGGTATCTTTCAAGCAATCAAAGGTTTTCACAATTCTTCAGTGCGAGTAAACCAAAGACTATAAGGGAGTT
TGACAGCTATTAAAACAAGGGCTCCACAGTTGGGAGGTAGCTTTGTGGTTTGGGGAGGTCTGTTTTTCATTATGGACAGC
AATATGGTTCAAGTCAGAGGGAAAGAAGATGCCTGGAACTCCATCAGAAGTGATGTTTTAAAAGGAGCTGTACTGGCAGC
AAGAAATGGACCAGTGGCCATGGTTGGGTCAGCCGTGACAGTGGGGTTTCTCCTAGCTTTAATTGAAGGAGCTGGTATCT
TGTTGACAAGATTGGCCTCTGTGTAGGTTCCCAGTGGTCCTTGGTTTGCTGAAGACTCCTCCCAGTTGCTCTCAACTCAG
TTACCGTCCTCACTTTTTGGAGACAATGGACAGTAGCAA

ORF - retro_chof_1693 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.57 %
Parental protein coverage: 100. %
Number of stop codons detected: 4
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMEEYAREP--CPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPMGVNHRLRGSLTAIKTRAPQLGGSFAV
MEEY..EP...PW..V.DCGG.FTMGT.GGGIFQAIKGF.NS...VN.RL.GSLTAIKTRAPQLGGSF.V
RetrocopyMEEYVQEPGSYPW*MVEDCGGVFTMGTLGGGIFQAIKGFHNSSVRVNQRL*GSLTAIKTRAPQLGGSFVV
ParentalWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFAS
WGGLF...D..MVQVRGKED.WNSI.S..L.GA.LAARNGPVAMVGSA...G.LLALIEGAGILLTR.AS
RetrocopyWGGLFFIMDSNMVQVRGKEDAWNSIRSDVLKGAVLAARNGPVAMVGSAVTVGFLLALIEGAGILLTRLAS
ParentalTQFPNGPQFAEDPSQLPSTQLPSSPFGDYRQYQ
...P.GP.FAED.SQL.STQLPSS.FGD..Q.Q
RetrocopyV*VPSGPWFAEDSSQLLSTQLPSSLFGDNGQ*Q

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide