RetrogeneDB ID:

retro_chof_1498

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_30852:2942..3518(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TPMT
Ensembl ID:ENSCHOG00000008676
Aliases:None
Description:thiopurine S-methyltransferase [Source:HGNC Symbol;Acc:12014]


Retrocopy-Parental alignment summary:






>retro_chof_1498
GATAATGAGGTATAGAAAACCGAGTACTAACTCTGGAAGACTGGCAAGAAAAGTGCGTGAGCCGCAACATTGCATTTCAT
CAAGAACAAGGACATCAGCTATTAAAGAAGCATTTGGATACTTTTCTTAATGGCAAGAGTGGACTCAGGATATTTTTTCC
TCTTTGTGGAAAAGCAGTTGAGATGAGATGGCTTGCAGACCTGGGACACAGAGTAGTTGGTGTATCGATCAGTGAATTTG
GGATTCGAGAATTTTTTACAGAGTAGAATCTTTCTTACTCAGAAGAACCAATTGCTGAAATTCCTGGAACCAAAGTATTT
AAGAGTTCTTCAGGGAACGTTTCATTGTACTGTTGCAGCATTTTTGATCTTTCCAGTAAATACTGGCAAATTTCACAGGA
TTTGGGATAGAGGAGCCTTAGTTGCTGTTAATCCAGGTGATCGAGAATGCTATGTTGATATAATGTTGTCCCTAACAAGA
AAAGGGTTCCACTGTCTCACATCTGTTGTTTCTTATGATCCAACTAAACATGCAGGCCCACCATTTTGTATTCCAGACAC
TGAAATTAACAGTTTG

ORF - retro_chof_1498 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.13 %
Parental protein coverage: 92.79 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalDNEVQK-NRVLTLEDWQGKWVSRNIAFHQEQGHQLLKKHLDTFLNGKSGLRIFFPLCGKAVEMRWFADLG
DNEV.K.NRVLTLEDWQ.K.VSRNIAFHQEQGHQLLKKHLDTFLNGKSGLRIFFPLCGKAVEMRW.ADLG
RetrocopyDNEV*K<NRVLTLEDWQEKCVSRNIAFHQEQGHQLLKKHLDTFLNGKSGLRIFFPLCGKAVEMRWLADLG
ParentalHTVVGVEISELGIREFFTEQNLSYSEEPIAEIPGAKVFKSSSGNISLYCC-SIFDISRVNIGKFDRIWDR
H.VVGV.ISE.GIREFFTE.NLSYSEEPIAEIPG.KVFKSSSGN.SLY.C...F.I..VN.GKF.RIWDR
RetrocopyHRVVGVSISEFGIREFFTE*NLSYSEEPIAEIPGTKVFKSSSGNVSLY-C>AAFLIFPVNTGKFHRIWDR
ParentalGALVAVNPGDRERYVDIMLSLTRKGFHYLACIVSYDPTKHAGPPFYVLDTEINRL
GALVAVNPGDRE.YVDIMLSLTRKGFH.L...VSYDPTKHAGPPF...DTEIN.L
RetrocopyGALVAVNPGDRECYVDIMLSLTRKGFHCLTSVVSYDPTKHAGPPFCIPDTEINSL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide