RetrogeneDB ID:

retro_chof_128

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_2708:17022..17232(+)
Located in intron of:ENSCHOG00000011164
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CYB5A
Ensembl ID:ENSCHOG00000000359
Aliases:None
Description:cytochrome b5 type A (microsomal) [Source:HGNC Symbol;Acc:2570]


Retrocopy-Parental alignment summary:






>retro_chof_128
GACGCTACTGAAAAGTCTGAGGATCTTGGGCACTCTTCAGATGCTAGACAACTGTCCAAAACACATTTCATTGAGAAGCT
TCATGCAGGTGACAAATCAAAGATAACCAAACCTTTGGGAATTTTAATTACTACCATTGATTCTAATTCCCGTTGGTTGA
CCAATTGGATGATCCCAGCCATCTCAGCACTGGTTGTAGCCCTGATATAT

ORF - retro_chof_128 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64.29 %
Parental protein coverage: 55.12 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalDATENFEDIGHSTDARELSKTFIIGELHPDDRSKLVKPSDTLITTVESHSSWWANWVIPAISALVVALMY
DATE..ED.GHS.DAR.LSKT..I..LH..D.SK..KP...LITT..S.S.W..NW.IPAISALVVAL.Y
RetrocopyDATEKSEDLGHSSDARQLSKTHFIEKLHAGDKSKITKPLGILITTIDSNSRWLTNWMIPAISALVVALIY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Choloepus hoffmanni was not studied using ChIP-Seq data.