RetrogeneDB ID:

retro_chof_122

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:GeneScaffold_2588:20565..21354(-)
Located in intron of:ENSCHOG00000005260
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HADHB
Ensembl ID:ENSCHOG00000010050
Aliases:None
Description:hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit [Source:HGNC Symbol;Acc:4803]


Retrocopy-Parental alignment summary:






>retro_chof_122
CCTGCCGTGGCCGAGTTCTCCACCAGCGAGACCATGGGCCACTCCGCAGACCGACTGGCTGCTGCCTTTGCCGTGCCCCG
ACGGGAACAGGACGAGTACGCGCTGCGCTCCCACAGTCTGGCCAAGAAGGCACAGGATGAAGGGCTCCTGTCAGACGTGG
TGCCCTTCAAAGTGCCAGGAAAAGATACAGTTACCAAAGATAATGGCATTCGTCCTTCCTCCCTGGAGCAGATGGCCAAG
CTGAGGCCCGCATTCATCAAGCCCTATGGCACGGTGATGGCTGCAAATTCTTCATTCCTGACTGATGGTGCCTCTGCCGT
GCTGATGATGGCCGAGGAAAAGGCTCTGGCCATGGGGTACAAGCCCAAGGCCTATCTGAGGGATTTTGTATATGTATCTC
AGGATCCAAAAGATCAACTTTTACTTGGACCAACATATGCTACTCCAAAAGTTCTAGAGAGAGCAGGATTAACAATGAAT
GATGTTGATGCTTTTGAATTTCACGAAGCTTTCTCCGGTCAGATTTTGGCTAATTTTAAAGCCATGGATTCTGATTGGTT
TGCGCAAAACTACATGGGCAGAAAAACCAAGGTTGGCCTGCCTCCCATGGAGAAGTTTAACACCTGGGGCGGATCGCTGT
CCCTGGGGCACCCGTTTGGAGCCACGGGCTGCCGGCTGGTCATGGCCGCTGCCAACAGGTTACGGAAGGAAGGCGGCCAG
TATGGCCTGGTGGCCGCCTGCGCGGCCGGAGGGCAGGGCCATGCTATGATAGTGGAAGCTTATCCAAAA

ORF - retro_chof_122 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 95.44 %
Parental protein coverage: 64.15 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalPAVAEFSTSETMGHSADRLAAAFAVPRREQDEYALRSHSLAKKAQDEGLLSDVVPFKVPGKDTVTKDNGI
PAVAEFSTSETMGHSADRLAAAFAVPRREQDEYALRSHSLAKKAQDEGLLSDVVPFKVPGKDTVTKDNGI
RetrocopyPAVAEFSTSETMGHSADRLAAAFAVPRREQDEYALRSHSLAKKAQDEGLLSDVVPFKVPGKDTVTKDNGI
ParentalRPSSLEQMAKLRPAFIKPYGTVTAANSSFLTDGASAVLMMAEEKALAMGYKPKAYLRDFVYVSQDPKDQL
RPSSLEQMAKLRPAFIKPYGTV.AANSSFLTDGASAVLMMAEEKALAMGYKPKAYLRDFVYVSQDPKDQL
RetrocopyRPSSLEQMAKLRPAFIKPYGTVMAANSSFLTDGASAVLMMAEEKALAMGYKPKAYLRDFVYVSQDPKDQL
ParentalLLGPTYATPKVLERAGLTMNDVDAFEFHEAFSXXXXXXXXXXXSDWFAQNYMGRKTKVGLPPMEKFNTWG
LLGPTYATPKVLERAGLTMNDVDAFEFHEAFS...........SDWFAQNYMGRKTKVGLPPMEKFNTWG
RetrocopyLLGPTYATPKVLERAGLTMNDVDAFEFHEAFSGQILANFKAMDSDWFAQNYMGRKTKVGLPPMEKFNTWG
ParentalGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK
GSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK
RetrocopyGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVEAYPK