RetrogeneDB ID:

retro_chof_1006

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_183358:3438..3927(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MRPL49
Ensembl ID:ENSCHOG00000012855
Aliases:None
Description:mitochondrial ribosomal protein L49 [Source:HGNC Symbol;Acc:1176]


Retrocopy-Parental alignment summary:






>retro_chof_1006
ATGGCGATGACCATGTTCCTGGCTGCGCTGAGGGGCTAGAGAACCCGCGTCCGGCCGGGCTCGGGGCTACAGCGCATGAG
CCAGACCCAGGGACCTCCTGATTACCCCAGCTTTGCGGAGTCTGTGCTTGAATACCAGTTTGTGGAGCCCCTTATACCCC
TCACCAGCATTCCAAAGCCCCCAACGCATGAGCATATCCCACCCCCAGTGGCTGGCTAACCTTTTGAGACCCTCCGCCCA
ACCTGACTTACTTTGTGTCGCAGTCTCAATGCACAACATTCCTGTCTACGGGGACATCACACATGGCAACCATCAGATGA
CAGTGATCAGGAAGGTGGAGGGGAACAGCTGAGTCCTACAGAAAGATGTGGAGGATTCTCTGAGCCCACTTCTGGGCAAG
ACATCCAACACTCAGGTAAACAAAGCACCCTGCAGGTTAAGGGCTACGCTGACCAGCAGCTCAAAGCTTGGCTCCCGGAG
AAGGGCTTC

ORF - retro_chof_1006 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.68 %
Parental protein coverage: 100. %
Number of stop codons detected: 3
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMAASVVRAVLWRWRTGVQPGRGLRHLSQTQGPPDYPSFVESAHEYQFVERLIPPTSIPKPPKHEQ-YHTP
MA.....A.L...RT.V.PG.GL...SQTQGPPDYPSF.ES..EYQFVE.LIP.TSIPKPP.HE..Y.TP
RetrocopyMAMTMFLAALRG*RTRVRPGSGLQRMSQTQGPPDYPSFAESVLEYQFVEPLIPLTSIPKPPTHEH<YPTP
ParentalSGWQPPQDPPPNLPYFVRRSR-MHNIPVYRDITHGNRQMTVIRKVEGDIWALQKDVED-FLSPLLGKTPI
SGW....DPPPNL.YFV..S..MHNIPVY.DITHGN.QMTVIRKVEG....LQKDVED.F..P..G....
RetrocopySGWLTF*DPPPNLTYFVSQSQ<MHNIPVYGDITHGNHQMTVIRKVEGNS*VLQKDVED<FSEPTSGQD--
ParentalTQVNEVTGTLRVKGYVDQQLKAWLLEKGF
.Q......TL.VKGY.DQQLKAWL.EKGF
RetrocopyIQHSGKQSTLQVKGYADQQLKAWLPEKGF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide